hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03402195/chunk_1/iprscan-20080502-03402195.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0461 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 135.7 5e-36 8 SM00674 70.3 2.4e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/8 439 461 .. 1 23 [] 20.8 0.2 SM00355 2/8 475 498 .. 1 23 [] 15.1 6.2 SM00355 3/8 505 528 .. 1 23 [] 25.9 0.0055 SM00355 4/8 535 558 .. 1 23 [] 18.3 1.1 SM00355 5/8 564 586 .. 1 23 [] 23.1 0.039 SM00355 6/8 592 614 .. 1 23 [] 12.2 13 SM00355 7/8 716 739 .. 1 23 [] 12.9 11 SM00355 8/8 760 785 .. 1 23 [] 7.4 46 SM00674 1/1 966 1030 .. 1 72 [] 70.3 2.4e-16 Alignments of top-scoring domains: SM00355: domain 1 of 8, from 439 to 461: score 20.8, E = 0.2 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C k+ ++ + +Hm+ H KIAA0461 439 FRCPH-CTKRLKNNiRFMNHMKHH 461 SM00355: domain 2 of 8, from 475 to 498: score 15.1, E = 6.2 *->ykCpigCgksfssk.aLkrHmr.vH<-* C++ C ++fs++ +L+ H+ +vH KIAA0461 475 TICQH-CYRQFSTPfQLQCHLEnVH 498 SM00355: domain 3 of 8, from 505 to 528: score 25.9, E = 0.0055 *->ykCpigCgksfssk.aLkrHmr.vH<-* kC+i C + f s++ + +Hm+++H KIAA0461 505 TKCKI-CEWAFESEpLFLQHMKdTH 528 SM00355: domain 4 of 8, from 535 to 558: score 18.3, E = 1.1 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+++ s +++ H r +H KIAA0461 535 YVCQV-CQYRSSLYsEVDVHFRmIH 558 SM00355: domain 5 of 8, from 564 to 586: score 23.1, E = 0.039 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C k+f++ +a+++H+++H KIAA0461 564 LLCPY-CLKVFKNGnAFQQHYMRH 586 SM00355: domain 6 of 8, from 592 to 614: score 12.2, E = 13 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C +f +++ ++H +H KIAA0461 592 YHCNK-CRLQFLFAkDKIEHKLQH 614 SM00355: domain 7 of 8, from 716 to 739: score 12.9, E = 11 *->ykCpigCgksfssk.aLkrHmr.vH<-* +C++ C +s++ +a+ +Hm + H KIAA0461 716 VHCSL-CRYSTCCSrAYANHMInNH 739 SM00355: domain 8 of 8, from 760 to 785: score 7.4, E = 46 *->ykCpigCgksfssk.aLkrHmr...vH<-* + C+ C +++s +a+ +H+ +++H KIAA0461 760 LACTS-CTFVTSVGdAMAKHLVfnpSH 785 SM00674: domain 1 of 1, from 966 to 1030: score 70.3, E = 2.4e-16 *->rrkyallekaLyeWilraiqrakgipisgedirekAleilqelgeea + ++ + e++L+eW+l qr++++p+++e++ +kA++i ++l KIAA0461 966 KYLSFEAEEKLAEWVLT--QREQQLPVNEETLFQKATKIGRSL---- 1006 klenFkaSkgWldrFkkRhnivkrk<-* +++Fk+S++W rF+ Rh+++ + KIAA0461 1007 -EGGFKISYEWAVRFMLRHHLTPHA 1030 //