hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03402195/chunk_1/iprscan-20080502-03402195.nocrc
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Query sequence: KIAA0461
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00096.16.ls  Zinc finger, C2H2 type                   101.7      2e-27   8
PF00096.16.fs  Zinc finger, C2H2 type                    86.0    1.1e-22   8
PF03184.9.fs   DDE superfamily endonuclease              33.4    4.3e-10   1
PF03184.9.ls   DDE superfamily endonuclease              14.4    1.8e-07   1
PF09091.1.fs   Centromere binding protein B, DNA bind    28.0    3.2e-07   1
PF09091.1.ls   Centromere binding protein B, DNA bind    30.0    7.7e-06   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls    2/8     439   461 ..     1    24 []    17.7    0.038
PF00096.16.ls    6/8     564   586 ..     1    24 []    18.2    0.027
PF09091.1.fs     1/1     961  1024 ..     1    64 []    28.0  3.2e-07
PF09091.1.ls     1/1     961  1024 ..     1    64 []    30.0  7.7e-06
PF03184.9.fs     1/1    1062  1218 ..     1   182 [.    33.4  4.3e-10
PF03184.9.ls     1/1    1062  1268 ..     1   242 []    14.4  1.8e-07

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 8, from 439 to 461: score 17.7, E = 0.038
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C k+ +++  + +H++ H   
    KIAA0461   439    FRCP-HCTKRLKNNIRFMNHMKHH    461  

PF00096.16.ls: domain 6 of 8, from 564 to 586: score 18.2, E = 0.027
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                        Cp +C k+F++   +++H ++H   
    KIAA0461   564    LLCP-YCLKVFKNGNAFQQHYMRH    586  

PF09091.1.fs: domain 1 of 1, from 961 to 1024: score 28.0, E = 3.2e-07
                   *->rkrkakypdl..ekalleWfrqqrakgipvsgeiIqekAkefarklg
                       +  +ky  ++ e+ l eW+  qr++++pv+ e++ +kA  + r l 
    KIAA0461   961    ENLEGKYLSFeaEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSL- 1006 

                   pedfkkaSnGWLdrFkkRh<-*
                    e+ +k S  W  rF+ Rh   
    KIAA0461  1007 -EGGFKISYEWAVRFMLRH    1024 

PF09091.1.ls: domain 1 of 1, from 961 to 1024: score 30.0, E = 7.7e-06
                   *->rkrkakypdl..ekalleWfrqqrakgipvsgeiIqekAkefarklg
                       +  +ky  ++ e+ l eW+  qr++++pv+ e++ +kA  + r l 
    KIAA0461   961    ENLEGKYLSFeaEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSL- 1006 

                   pedfkkaSnGWLdrFkkRh<-*
                    e+ +k S  W  rF+ Rh   
    KIAA0461  1007 -EGGFKISYEWAVRFMLRH    1024 

PF03184.9.fs: domain 1 of 1, from 1062 to 1218: score 33.4, E = 4.3e-10
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      +p   i + DE +lf++     +   ss+ +++  +++ ++  + ++
    KIAA0461  1062    LPLSMIVAIDEISLFLDTEV--L---SSDDRKENALQTVGT-GEPWC 1102 

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                    v+ a++a+g +Lp lv ++g+  +++           ++ + ++a   +
    KIAA0461  1103 DVVLAILADGTVLPTLVFYRGQMDQPANM---------PDSILLEAKESG 1143 

                   WmTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgsHprtdefi
                   + ++ei+e W ++v+ ++++        +  k +L++D h++H+ + e+ 
    KIAA0461  1144 YSDDEIMELWSTRVWQKHTA-------CQRSKGMLVMDCHRTHL-SEEV- 1184 

                   RmatcelnNIillfLPahsssllQPlDqGVisslK<-*
                     a      + +++ Pa++ss++QPlD+ + +++K   
    KIAA0461  1185 -LAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVK    1218 

PF03184.9.ls: domain 1 of 1, from 1062 to 1268: score 14.4, E = 1.8e-07
                   *->ippediFNaDETGlfwgllpngtVvgsseregrrvpgkkrgekrrlT
                      +p   i + DE +lf++     +   ss+ +++  +++ ++  + ++
    KIAA0461  1062    LPLSMIVAIDEISLFLDTEV--L---SSDDRKENALQTVGT-GEPWC 1102 

                   vvicaNaaGgeKLpPlvIgKgknprsfkfYflaekkikslpveYkankna
                    v+ a++a+g +Lp lv ++g+  +++           ++ + ++a   +
    KIAA0461  1103 DVVLAILADGTVLPTLVFYRGQMDQPANM---------PDSILLEAKESG 1143 

                   WmTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgsHprtdefi
                   + ++ei+e W ++v+ ++++        +  k +L++D h++H+ + e+ 
    KIAA0461  1144 YSDDEIMELWSTRVWQKHTA-------CQRSKGMLVMDCHRTHL-SEEV- 1184 

                   RmatcelnNIillfLPahsssllQPlDqGVisslKraYRrkllkkalagi
                     a      + +++ Pa++ss++QPlD+ + +++K    +k+ ++a++  
    KIAA0461  1185 -LAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMA 1233 

                   eslskeqkkskltnpqktlnlldAlewiakAWnkav......kketIvsg
                    +  +                 d l+ ++  W  +v +  ++ +e  +++
    KIAA0461  1234 DTACD----------------SDVLLQLVLVWLGEVlgvigdCPELVQRS 1267 

                   w<-*
                   +   
    KIAA0461  1268 F    1268 

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