hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03352665/chunk_1/iprscan-20080502-03352665.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0458 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03154.6.ls Atrophin-1 family 2688.5 0 1 PF03154.6.fs Atrophin-1 family 2686.5 0 1 PF01448.14.fs ELM2 domain 78.4 3.5e-22 1 PF01448.14.ls ELM2 domain 80.2 6e-21 1 PF00320.17.fs GATA zinc finger 46.7 6.3e-13 1 PF00320.17.ls GATA zinc finger 48.7 1.8e-11 1 PF01426.8.fs BAH domain 41.6 7.4e-11 1 PF01426.8.ls BAH domain 43.4 7.2e-10 1 PF00249.21.fs Myb-like DNA-binding domain 38.6 1.4e-09 1 PF00249.21.ls Myb-like DNA-binding domain 40.3 6.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01426.8.fs 1/1 89 269 .. 1 159 [] 41.6 7.4e-11 PF01426.8.ls 1/1 89 269 .. 1 159 [] 43.4 7.2e-10 PF01448.14.ls 1/1 270 329 .. 1 82 [] 80.2 6e-21 PF01448.14.fs 1/1 270 329 .. 1 82 [] 78.4 3.5e-22 PF00249.21.ls 1/1 379 425 .. 1 65 [] 40.3 6.3e-09 PF00249.21.fs 1/1 379 425 .. 1 65 [] 38.6 1.4e-09 PF00320.17.fs 1/1 493 528 .. 1 36 [] 46.7 6.3e-13 PF00320.17.ls 1/1 493 528 .. 1 36 [] 48.7 1.8e-11 PF03154.6.fs 1/1 554 1552 .] 1 1111 [] 2686.5 0 PF03154.6.ls 1/1 554 1552 .] 1 1111 [] 2688.5 0 Alignments of top-scoring domains: PF01426.8.fs: domain 1 of 1, from 89 to 269: score 41.6, E = 7.4e-11 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeiv.... + y++GD+V++e+ ++ py+++ I+ + ++ KIAA0458 89 VVYRPGDCVYIESRR--------------PNTPYFICSIQDFKlvhn 121 ............................elfedsdgsk.ekmvh....vr ++ +++++ +++ + + ++++++l e+ +g+ ++k+ h +v KIAA0458 122 sqaccrsptpalcdppacslpvasqppqHLSEAGRGPVgSKRDHllmnVK 171 wfyRPeetP...yikslgrafnkD..............irEvflsdecdd w+yR +e+P++ y + ++ +n+ +++++ +++ + rE+f sd+ d+ KIAA0458 172 WYYRQSEVPdsvYQHLVQDRHNENdsgrelvitdpvikNRELFISDYVDT 221 vplediigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedvFf + + +gkC++ ++sd++ +++ + + d Ff KIAA0458 222 YHAAALRGKCNISHFSDIFAAREFKA------------------RVDSFF 253 CellYdpekgsFkklp<-* + l Y+pe++++ + KIAA0458 254 YILGYNPETRRLNSTQ 269 PF01426.8.ls: domain 1 of 1, from 89 to 269: score 43.4, E = 7.2e-10 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeiv.... + y++GD+V++e+ ++ py+++ I+ + ++ KIAA0458 89 VVYRPGDCVYIESRR--------------PNTPYFICSIQDFKlvhn 121 ............................elfedsdgsk.ekmvh....vr ++ +++++ +++ + + ++++++l e+ +g+ ++k+ h +v KIAA0458 122 sqaccrsptpalcdppacslpvasqppqHLSEAGRGPVgSKRDHllmnVK 171 wfyRPeetP...yikslgrafnkD..............irEvflsdecdd w+yR +e+P++ y + ++ +n+ +++++ +++ + rE+f sd+ d+ KIAA0458 172 WYYRQSEVPdsvYQHLVQDRHNENdsgrelvitdpvikNRELFISDYVDT 221 vplediigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedvFf + + +gkC++ ++sd++ +++ + + d Ff KIAA0458 222 YHAAALRGKCNISHFSDIFAAREFKA------------------RVDSFF 253 CellYdpekgsFkklp<-* + l Y+pe++++ + KIAA0458 254 YILGYNPETRRLNSTQ 269 PF01448.14.ls: domain 1 of 1, from 270 to 329: score 80.2, E = 6e-21 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel geIrVG+++QA++P++ ++++ d + ++++ +el KIAA0458 270 GEIRVGPSHQAKLPDL----QPFPSPDGDTVTQH----------EEL 302 vWsPeDsqnqlddekideylrlarskksirtfera<-* vW+P+ ++d+++ +ylr+ars +++f+++ KIAA0458 303 VWMPG-----VNDCDLLMYLRAARS---MAAFAGM 329 PF01448.14.fs: domain 1 of 1, from 270 to 329: score 78.4, E = 3.5e-22 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel geIrVG+++QA++P++ ++++ d + ++++ +el KIAA0458 270 GEIRVGPSHQAKLPDL----QPFPSPDGDTVTQH----------EEL 302 vWsPeDsqnqlddekideylrlarskksirtfera<-* vW+P+ ++d+++ +ylr+ars +++f+++ KIAA0458 303 VWMPG-----VNDCDLLMYLRAARS---MAAFAGM 329 PF00249.21.ls: domain 1 of 1, from 379 to 425: score 40.3, E = 6.3e-09 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++Wt++E +++v++++++Gk+ + +I ++l KIAA0458 379 EKCWTEDEVKRFVKGLRQYGKN-----------FFRIRKEL------ 408 nvlgrtaeqcklryykyk<-* ++++ + +++ +yy +k KIAA0458 409 -LPNKETGELITFYYYWK 425 PF00249.21.fs: domain 1 of 1, from 379 to 425: score 38.6, E = 1.4e-09 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++Wt++E +++v++++++Gk+ + +I ++l KIAA0458 379 EKCWTEDEVKRFVKGLRQYGKN-----------FFRIRKEL------ 408 nvlgrtaeqcklryykyk<-* ++++ + +++ +yy +k KIAA0458 409 -LPNKETGELITFYYYWK 425 PF00320.17.fs: domain 1 of 1, from 493 to 528: score 46.7, E = 6.3e-13 *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-* C++C tt++ W++g++ n+ LC C +++kk+g + KIAA0458 493 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 528 PF00320.17.ls: domain 1 of 1, from 493 to 528: score 48.7, E = 1.8e-11 *->CsnCgttkTplWRrgpdGnrtLCNACGLyykkhgvk<-* C++C tt++ W++g++ n+ LC C +++kk+g + KIAA0458 493 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 528 PF03154.6.fs: domain 1 of 1, from 554 to 1552: score 2686.5, E = 0 *->gKHsMRTRRsRgslStLRSGrkkqtaSPdgrtspsnedlrssGrsSp gKHsMRTRRsRgs+StLRSGrkkq+aSPdgrtsp+ned+rssGr+Sp KIAA0458 554 GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSP 600 SaaStsstDsKaEsvkKsaKveqKiKEEasSPlKsaKRqREkvAsdteEp SaaStss+DsKaE+vkKsaK K+KEEasSPlKs+KRqREkvAsdteE+ KIAA0458 601 SAASTSSNDSKAETVKKSAK---KVKEEASSPLKSNKRQREKVASDTEEA 647 ervsaKkaKTQvrGGvlhelsrPdsPSeGeGeGEGEgEveeesSSdsRSv +r+s+Kk+KTQ e+srP+sPS EGEgE SSdsRSv KIAA0458 648 DRTSSKKTKTQ-------EISRPNSPS------EGEGE-----SSDSRSV 679 neegSSDpKDIDQDNRSsSPSIPSPqdGNESDSDSSAqqlqqlqQqqllq n+egSSDpKDIDQDNRS+SPSIPSPqd NESDSDSSA Qqq+lq KIAA0458 680 NDEGSSDPKDIDQDNRSTSPSIPSPQD-NESDSDSSA-------QQQMLQ 721 sqppplaaalaetpAsssaPPgttQlPtiaaqPaPSAtsvpPqqSPtaas +qpp+l+a++++tpA+ssaPPgt+QlPt++ P+PSAt+vpPq+SPta++ KIAA0458 722 AQPPALQAPTGVTPAPSSAPPGTPQLPTPG--PTPSATAVPPQGSPTASQ 769 advPqqplaqsapvvassiqaasalHpqqrpPvlsalsphsplsPvslfP a P+qp+a++apv++++iq+a+alHp qrpP sph+p++P s++P KIAA0458 770 A--PNQPQAPTAPVPHTHIQQAPALHP-QRPP-----SPHPPPHP-SPHP 810 PslpltGSA.QPsaPsvaqPsLPsPhHGqgpPsPHsLQaGPPllqhPhsq P++pltGSA+QPsaPs+aqP+L HGqgpP+PHsLQaG PllqhP + KIAA0458 811 PLQPLTGSAgQPSAPSHAQPPL----HGQGPPGPHSLQAG-PLLQHP--G 853 pPqnFsllaQasvgqlPlgtssaarshayPhtslqlPaSQSAlqsqQPPR pPq+F+l++Qas+gq+Plgts+aa ayPhtslqlPaSQSAlqsqQPPR KIAA0458 854 PPQPFGLPPQASQGQAPLGTSPAA---AYPHTSLQLPASQSALQSQQPPR 900 eqpLPpAPlamPHGsqIKPPPTTPIpQLaaPqsHKhppHlssPspfPqMp eqpLPpAPlamPH IKPPPTTPIpQL+aPq+HKhppHls+Pspf +M+ KIAA0458 901 EQPLPPAPLAMPH---IKPPPTTPIPQLPAPQAHKHPPHLSGPSPF-SMN 946 sNLPPPPALKPLsSLpthHPPsAhPPPLqLMPQsQpLpassaQPpvlTQS +NLPPPPALKPLsSL+thHPPsAhPPPLqLMPQsQpLp+s+aQPp+lTQS KIAA0458 947 ANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQS 996 QsLPvispvasHPgkGlhqvasapPlasHPlvpsaasaisplPslppqPs Q+LP +p+asHP++Glhqva++pP+a+HP+vp+++++i+p P++p+ KIAA0458 997 QNLP--PPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP-PTCPS--- 1040 FaTstfpAGvltaAqPPpSsaaasaGvppPsssassssismPlPasvGcs Tst+pAG++t+AqPP+S+aaas+G+++ ++ss+ KIAA0458 1041 --TSTPPAGPGTSAQPPCSGAAASGGSIA---GGSSC------------- 1072 GPtaelpqiqIKEEpLDeaEEpESPPPPpRSPSPEPTVVntpsHASQSAR +lp++qIKEE+LD+aEEpESPPPPpRSPSPEPTVV+tpsHASQSAR KIAA0458 1073 ----PLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTVVDTPSHASQSAR 1118 FyKHLDRGYNSCARtDLyFtPLasSKLAkKREEAvEKakREAEQKAREEk FyKHLDRGYNSCARtDLyF+PLa+SKLAkKREEA+EKakREAEQKAREE+ KIAA0458 1119 FYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREER 1168 EREkErEkErERERERErEAeRaAvsslslslslfflfsclPnhcfcPPP EREkE+EkErERERERErEAeRaA KIAA0458 1169 EREKEKEKEREREREREREAERAA-------------------------- 1192 sqkaaSSSsHesrmsepqLaGPahmRpsFeqPPTTiAAVpPYIGPDTPAL ka SSS+He+r+s+pqL+GP+hmRpsFe+PPTTiAAVpPYIGPDTPAL KIAA0458 1193 --KA-SSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPAL 1239 RTLSeYARPHvMSPTNRNHPFYvsLnPaDPLLAYHMPGLYnadPslRERE RTLSeYARPHvMSPTNRNHPFY++LnP+DPLLAYHMPGLYn+dP++RERE KIAA0458 1240 RTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERE 1289 LREREiREReiRERELRERMKPGFEVKPPeLdaLHPsaNPMEHFARHgAi LREREiREReiRERELRERMKPGFEVKPPeLd+LHP+aNPMEHFARH+A+ KIAA0458 1290 LREREIREREIRERELRERMKPGFEVKPPELDPLHPAANPMEHFARHSAL 1339 tlPpiPagPHpFAsfHPGLNpLERERLALAGPQLRPElsYpeRLaAERlH t+Pp+ agPHpFAsfHPGLNpLERERLALAGPQLRPE+sYp+RLaAER+H KIAA0458 1340 TIPPT-AGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIH 1388 AERMAsvasDPlARLQMfNVTPHHHQHSHIHSHLHLHQQDPLHQGSssPv AERMAs++sDPlARLQMfNVTPHHHQHSHIHSHLHLHQQDPLHQGS++Pv KIAA0458 1389 AERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPV 1438 HPLaVDPLaaGPhLARFPyPgGaiPNPLLGqpPHEHEMLRHPvFGaayPR HPL VDPL+aGPhLARFPyP+G++PNPLLGqpPHEHEMLRHPvFG++yPR KIAA0458 1439 HPL-VDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPR 1487 eLqGAIPqPMSAAHQLQAMHAQSAELqrLamEQQWLHGHhhlhgGpLPSQ +L+GAIP+PMSAAHQLQAMHAQSAELqrLamEQQWLHGH+h+hgG+LPSQ KIAA0458 1488 DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQ 1537 EDYYsrlikesdkql<-* EDYYsrl+ke+dkql KIAA0458 1538 EDYYSRLKKEGDKQL 1552 PF03154.6.ls: domain 1 of 1, from 554 to 1552: score 2688.5, E = 0 *->gKHsMRTRRsRgslStLRSGrkkqtaSPdgrtspsnedlrssGrsSp gKHsMRTRRsRgs+StLRSGrkkq+aSPdgrtsp+ned+rssGr+Sp KIAA0458 554 GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSP 600 SaaStsstDsKaEsvkKsaKveqKiKEEasSPlKsaKRqREkvAsdteEp SaaStss+DsKaE+vkKsaK K+KEEasSPlKs+KRqREkvAsdteE+ KIAA0458 601 SAASTSSNDSKAETVKKSAK---KVKEEASSPLKSNKRQREKVASDTEEA 647 ervsaKkaKTQvrGGvlhelsrPdsPSeGeGeGEGEgEveeesSSdsRSv +r+s+Kk+KTQ e+srP+sPS EGEgE SSdsRSv KIAA0458 648 DRTSSKKTKTQ-------EISRPNSPS------EGEGE-----SSDSRSV 679 neegSSDpKDIDQDNRSsSPSIPSPqdGNESDSDSSAqqlqqlqQqqllq n+egSSDpKDIDQDNRS+SPSIPSPqd NESDSDSSA Qqq+lq KIAA0458 680 NDEGSSDPKDIDQDNRSTSPSIPSPQD-NESDSDSSA-------QQQMLQ 721 sqppplaaalaetpAsssaPPgttQlPtiaaqPaPSAtsvpPqqSPtaas +qpp+l+a++++tpA+ssaPPgt+QlPt++ P+PSAt+vpPq+SPta++ KIAA0458 722 AQPPALQAPTGVTPAPSSAPPGTPQLPTPG--PTPSATAVPPQGSPTASQ 769 advPqqplaqsapvvassiqaasalHpqqrpPvlsalsphsplsPvslfP a P+qp+a++apv++++iq+a+alHp qrpP sph+p++P s++P KIAA0458 770 A--PNQPQAPTAPVPHTHIQQAPALHP-QRPP-----SPHPPPHP-SPHP 810 PslpltGSA.QPsaPsvaqPsLPsPhHGqgpPsPHsLQaGPPllqhPhsq P++pltGSA+QPsaPs+aqP+L HGqgpP+PHsLQaG PllqhP + KIAA0458 811 PLQPLTGSAgQPSAPSHAQPPL----HGQGPPGPHSLQAG-PLLQHP--G 853 pPqnFsllaQasvgqlPlgtssaarshayPhtslqlPaSQSAlqsqQPPR pPq+F+l++Qas+gq+Plgts+aa ayPhtslqlPaSQSAlqsqQPPR KIAA0458 854 PPQPFGLPPQASQGQAPLGTSPAA---AYPHTSLQLPASQSALQSQQPPR 900 eqpLPpAPlamPHGsqIKPPPTTPIpQLaaPqsHKhppHlssPspfPqMp eqpLPpAPlamPH IKPPPTTPIpQL+aPq+HKhppHls+Pspf +M+ KIAA0458 901 EQPLPPAPLAMPH---IKPPPTTPIPQLPAPQAHKHPPHLSGPSPF-SMN 946 sNLPPPPALKPLsSLpthHPPsAhPPPLqLMPQsQpLpassaQPpvlTQS +NLPPPPALKPLsSL+thHPPsAhPPPLqLMPQsQpLp+s+aQPp+lTQS KIAA0458 947 ANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQS 996 QsLPvispvasHPgkGlhqvasapPlasHPlvpsaasaisplPslppqPs Q+LP +p+asHP++Glhqva++pP+a+HP+vp+++++i+p P++p+ KIAA0458 997 QNLP--PPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITP-PTCPS--- 1040 FaTstfpAGvltaAqPPpSsaaasaGvppPsssassssismPlPasvGcs Tst+pAG++t+AqPP+S+aaas+G+++ ++ss+ KIAA0458 1041 --TSTPPAGPGTSAQPPCSGAAASGGSIA---GGSSC------------- 1072 GPtaelpqiqIKEEpLDeaEEpESPPPPpRSPSPEPTVVntpsHASQSAR +lp++qIKEE+LD+aEEpESPPPPpRSPSPEPTVV+tpsHASQSAR KIAA0458 1073 ----PLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTVVDTPSHASQSAR 1118 FyKHLDRGYNSCARtDLyFtPLasSKLAkKREEAvEKakREAEQKAREEk FyKHLDRGYNSCARtDLyF+PLa+SKLAkKREEA+EKakREAEQKAREE+ KIAA0458 1119 FYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREER 1168 EREkErEkErERERERErEAeRaAvsslslslslfflfsclPnhcfcPPP EREkE+EkErERERERErEAeRaA KIAA0458 1169 EREKEKEKEREREREREREAERAA-------------------------- 1192 sqkaaSSSsHesrmsepqLaGPahmRpsFeqPPTTiAAVpPYIGPDTPAL ka SSS+He+r+s+pqL+GP+hmRpsFe+PPTTiAAVpPYIGPDTPAL KIAA0458 1193 --KA-SSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPAL 1239 RTLSeYARPHvMSPTNRNHPFYvsLnPaDPLLAYHMPGLYnadPslRERE RTLSeYARPHvMSPTNRNHPFY++LnP+DPLLAYHMPGLYn+dP++RERE KIAA0458 1240 RTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERE 1289 LREREiREReiRERELRERMKPGFEVKPPeLdaLHPsaNPMEHFARHgAi LREREiREReiRERELRERMKPGFEVKPPeLd+LHP+aNPMEHFARH+A+ KIAA0458 1290 LREREIREREIRERELRERMKPGFEVKPPELDPLHPAANPMEHFARHSAL 1339 tlPpiPagPHpFAsfHPGLNpLERERLALAGPQLRPElsYpeRLaAERlH t+Pp+ agPHpFAsfHPGLNpLERERLALAGPQLRPE+sYp+RLaAER+H KIAA0458 1340 TIPPT-AGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIH 1388 AERMAsvasDPlARLQMfNVTPHHHQHSHIHSHLHLHQQDPLHQGSssPv AERMAs++sDPlARLQMfNVTPHHHQHSHIHSHLHLHQQDPLHQGS++Pv KIAA0458 1389 AERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPV 1438 HPLaVDPLaaGPhLARFPyPgGaiPNPLLGqpPHEHEMLRHPvFGaayPR HPL VDPL+aGPhLARFPyP+G++PNPLLGqpPHEHEMLRHPvFG++yPR KIAA0458 1439 HPL-VDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPR 1487 eLqGAIPqPMSAAHQLQAMHAQSAELqrLamEQQWLHGHhhlhgGpLPSQ +L+GAIP+PMSAAHQLQAMHAQSAELqrLamEQQWLHGH+h+hgG+LPSQ KIAA0458 1488 DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQ 1537 EDYYsrlikesdkql<-* EDYYsrl+ke+dkql KIAA0458 1538 EDYYSRLKKEGDKQL 1552 //