hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03254185/chunk_1/iprscan-20080502-03254185.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0453 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00165 35.6 6.6e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00165 1/1 1460 1497 .. 1 38 [] 35.6 6.6e-06 Alignments of top-scoring domains: SM00165: domain 1 of 1, from 1460 to 1497: score 35.6, E = 6.6e-06 *->deekieqLleMGFsreeavdALratngNverAaeyLls<-* +e ++++L e+GFs + +++AL a++g++ Aa +L+ KIAA0453 1460 LELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFK 1497 //