# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg00323.fasta.nr -Q ../query/KIAA0452.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0452, 453 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826881 sequences Expectation_n fit: rho(ln(x))= 4.8965+/-0.000184; mu= 13.0949+/- 0.010 mean_var=72.6526+/-14.027, 0's: 28 Z-trim: 30 B-trim: 13 in 1/63 Lambda= 0.150470 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119627230|gb|EAX06825.1| hCG40295, isoform CRA_ ( 405) 2485 548.5 1.1e-153 gi|55958009|emb|CAI13138.1| tetratricopeptide repe ( 420) 2485 548.6 1.1e-153 gi|55958007|emb|CAI13136.1| tetratricopeptide repe ( 426) 2119 469.1 9.2e-130 gi|74743633|sp|Q5SRH9.1|TT39A_HUMAN RecName: Full= ( 613) 2119 469.2 1.2e-129 gi|34191892|gb|AAH28374.1| TTC39A protein [Homo sa ( 629) 2115 468.4 2.2e-129 gi|114556638|ref|XP_513400.2| PREDICTED: similar t ( 577) 1875 416.3 1e-113 gi|55958004|emb|CAI13133.1| tetratricopeptide repe ( 188) 1260 282.3 6.8e-74 gi|55958008|emb|CAI13137.1| tetratricopeptide repe ( 297) 1046 236.0 9.3e-60 gi|55958006|emb|CAI13135.1| tetratricopeptide repe ( 319) 1046 236.1 9.8e-60 gi|221042056|dbj|BAH12705.1| unnamed protein produ ( 550) 1046 236.3 1.5e-59 gi|55958002|emb|CAI13131.1| tetratricopeptide repe ( 550) 1046 236.3 1.5e-59 gi|2865252|gb|AAC39582.1| unknown [Homo sapiens] ( 574) 1046 236.3 1.5e-59 gi|221043682|dbj|BAH13518.1| unnamed protein produ ( 577) 1046 236.3 1.5e-59 gi|119627231|gb|EAX06826.1| hCG40295, isoform CRA_ ( 578) 1046 236.3 1.5e-59 gi|221307588|ref|NP_001138304.1| tetratricopeptide ( 581) 1046 236.3 1.5e-59 gi|109004764|ref|XP_001111125.1| PREDICTED: simila ( 574) 1042 235.4 2.7e-59 gi|109004761|ref|XP_001111084.1| PREDICTED: simila ( 578) 1042 235.4 2.8e-59 gi|194665808|ref|XP_001788027.1| PREDICTED: simila ( 668) 1015 229.6 1.8e-57 gi|194207471|ref|XP_001492240.2| PREDICTED: simila ( 739) 1008 228.1 5.5e-57 gi|119627232|gb|EAX06827.1| hCG40295, isoform CRA_ ( 433) 1005 227.3 5.8e-57 gi|26345648|dbj|BAC36475.1| unnamed protein produc ( 452) 1001 226.4 1.1e-56 gi|148698760|gb|EDL30707.1| RIKEN cDNA 4922503N01, ( 532) 1001 226.5 1.2e-56 gi|148698759|gb|EDL30706.1| RIKEN cDNA 4922503N01, ( 558) 1001 226.5 1.3e-56 gi|22382123|gb|AAH26660.1| Tetratricopeptide repea ( 576) 1001 226.5 1.3e-56 gi|149035686|gb|EDL90367.1| similar to RIKEN cDNA ( 576) 1001 226.5 1.3e-56 gi|23274100|gb|AAH23883.1| Tetratricopeptide repea ( 576) 1001 226.5 1.3e-56 gi|197245908|gb|AAI68701.1| RGD1311126 protein [Ra ( 578) 1001 226.5 1.3e-56 gi|150438861|sp|A2ACP1.1|TT39A_MOUSE RecName: Full ( 578) 1001 226.5 1.3e-56 gi|148698762|gb|EDL30709.1| RIKEN cDNA 4922503N01, ( 580) 1001 226.5 1.3e-56 gi|149035685|gb|EDL90366.1| similar to RIKEN cDNA ( 602) 1001 226.5 1.4e-56 gi|118094646|ref|XP_422466.2| PREDICTED: similar t ( 573) 915 207.9 5.5e-51 gi|123915913|sp|Q28D40.1|TT39A_XENTR RecName: Full ( 562) 882 200.7 7.7e-49 gi|189538087|ref|XP_691024.3| PREDICTED: similar t ( 503) 851 193.9 7.5e-47 gi|47225641|emb|CAG07984.1| unnamed protein produc ( 603) 812 185.5 3.1e-44 gi|122890077|emb|CAM13655.1| tetratricopeptide rep ( 189) 796 181.6 1.4e-43 gi|55958003|emb|CAI13132.1| tetratricopeptide repe ( 227) 768 175.6 1.1e-41 gi|150438860|sp|A1A5Y5.1|TT39A_DANRE RecName: Full ( 565) 758 173.8 9.8e-41 gi|47216922|emb|CAG02094.1| unnamed protein produc ( 664) 738 169.5 2.2e-39 gi|122890080|emb|CAM13658.1| tetratricopeptide rep ( 137) 700 160.6 2.1e-37 gi|122890081|emb|CAM13659.1| tetratricopeptide rep ( 160) 700 160.7 2.4e-37 gi|149412974|ref|XP_001507830.1| PREDICTED: simila ( 616) 690 159.0 2.9e-36 gi|126335779|ref|XP_001372834.1| PREDICTED: simila ( 555) 684 157.7 6.6e-36 gi|123910198|sp|Q28DB0.1|TT39B_XENTR RecName: Full ( 588) 675 155.8 2.7e-35 gi|82180495|sp|Q5XHH9.1|TT39B_XENLA RecName: Full= ( 586) 673 155.3 3.6e-35 gi|118104035|ref|XP_424931.2| PREDICTED: similar t ( 554) 661 152.7 2.1e-34 gi|73971670|ref|XP_531937.2| PREDICTED: similar to ( 609) 658 152.1 3.6e-34 gi|74209972|dbj|BAE21284.1| unnamed protein produc ( 459) 652 150.7 7.1e-34 gi|149059523|gb|EDM10461.1| rCG55225 [Rattus norve ( 617) 653 151.0 7.6e-34 gi|26339764|dbj|BAC33545.1| unnamed protein produc ( 518) 652 150.7 7.8e-34 gi|148699081|gb|EDL31028.1| RIKEN cDNA 1810054D07, ( 530) 652 150.7 7.9e-34 >>gi|119627230|gb|EAX06825.1| hCG40295, isoform CRA_a [H (405 aa) initn: 2476 init1: 2476 opt: 2485 Z-score: 2915.6 bits: 548.5 E(): 1.1e-153 Smith-Waterman score: 2485; 98.153% identity (98.417% similar) in 379 aa overlap (48-425:1-379) 20 30 40 50 60 70 KIAA04 VGDPHTGTGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDL :::::::::::::::::::::::::::::: gi|119 MDSSPSLPLIRTPESSLHEALDQCMTALDL 10 20 30 80 90 100 110 120 130 KIAA04 FLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQR 40 50 60 70 80 90 140 150 160 170 180 190 KIAA04 HRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRA 100 110 120 130 140 150 200 210 220 230 240 250 KIAA04 LHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGE 160 170 180 190 200 210 260 270 280 290 300 310 KIAA04 NHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVL 220 230 240 250 260 270 320 330 340 350 360 370 KIAA04 CVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAV 280 290 300 310 320 330 380 390 400 410 420 430 KIAA04 SDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGP-RENQPESRGRRGPSGRAAWE :::::::::::::::::::::::::::::::::::::: : :: . : gi|119 SDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGQERTNQRAGAGEALLAEQPGKT 340 350 360 370 380 390 440 450 KIAA04 DKGGGGICGAWDFDWEI gi|119 REEEAFVVPGILTGR 400 >>gi|55958009|emb|CAI13138.1| tetratricopeptide repeat d (420 aa) initn: 2476 init1: 2476 opt: 2485 Z-score: 2915.4 bits: 548.6 E(): 1.1e-153 Smith-Waterman score: 2485; 98.153% identity (98.417% similar) in 379 aa overlap (48-425:1-379) 20 30 40 50 60 70 KIAA04 VGDPHTGTGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDL :::::::::::::::::::::::::::::: gi|559 MDSSPSLPLIRTPESSLHEALDQCMTALDL 10 20 30 80 90 100 110 120 130 KIAA04 FLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 FLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQR 40 50 60 70 80 90 140 150 160 170 180 190 KIAA04 HRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 HRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRA 100 110 120 130 140 150 200 210 220 230 240 250 KIAA04 LHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 LHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGE 160 170 180 190 200 210 260 270 280 290 300 310 KIAA04 NHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 NHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVL 220 230 240 250 260 270 320 330 340 350 360 370 KIAA04 CVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 CVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAV 280 290 300 310 320 330 380 390 400 410 420 430 KIAA04 SDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGP-RENQPESRGRRGPSGRAAWE :::::::::::::::::::::::::::::::::::::: : :: . : gi|559 SDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGQERTNQRAGAGEALLAEQPGKT 340 350 360 370 380 390 440 450 KIAA04 DKGGGGICGAWDFDWEI gi|559 REEEAFVVPGILTGRYRTAALQWREVEGGA 400 410 420 >>gi|55958007|emb|CAI13136.1| tetratricopeptide repeat d (426 aa) initn: 2118 init1: 2118 opt: 2119 Z-score: 2485.9 bits: 469.1 E(): 9.2e-130 Smith-Waterman score: 2119; 96.988% identity (97.892% similar) in 332 aa overlap (45-376:4-332) 20 30 40 50 60 70 KIAA04 GSVVGDPHTGTGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTA .:: . .:: :::::::::::::::: gi|559 MTSAGG--APGALP-AGTPESSLHEALDQCMTA 10 20 30 80 90 100 110 120 130 KIAA04 LDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 LDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQML 40 50 60 70 80 90 140 150 160 170 180 190 KIAA04 CQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 CQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVR 100 110 120 130 140 150 200 210 220 230 240 250 KIAA04 PRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 PRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYC 160 170 180 190 200 210 260 270 280 290 300 310 KIAA04 KGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 KGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFR 220 230 240 250 260 270 320 330 340 350 360 370 KIAA04 SVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 SVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNI 280 290 300 310 320 330 380 390 400 410 420 430 KIAA04 DAVSDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQPESRGRRGPSGRAA :: gi|559 DAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYI 340 350 360 370 380 390 >>gi|74743633|sp|Q5SRH9.1|TT39A_HUMAN RecName: Full=Tetr (613 aa) initn: 2118 init1: 2118 opt: 2119 Z-score: 2483.8 bits: 469.2 E(): 1.2e-129 Smith-Waterman score: 2119; 99.068% identity (99.068% similar) in 322 aa overlap (55-376:12-333) 30 40 50 60 70 80 KIAA04 TGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDLFLTNQFS : :::::::::::::::::::::::::: gi|747 MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFS 10 20 30 40 90 100 110 120 130 140 KIAA04 EALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 EALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSV 50 60 70 80 90 100 150 160 170 180 190 200 KIAA04 TDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHA 110 120 130 140 150 160 210 220 230 240 250 260 KIAA04 CSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 CSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEG 170 180 190 200 210 220 270 280 290 300 310 320 KIAA04 GVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLC 230 240 250 260 270 280 330 340 350 360 370 380 KIAA04 YHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAVSDGGPGR :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 YHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEEC 290 300 310 320 330 340 390 400 410 420 430 440 KIAA04 GWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQPESRGRRGPSGRAAWEDKGGGGIC gi|747 CEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMF 350 360 370 380 390 400 >>gi|34191892|gb|AAH28374.1| TTC39A protein [Homo sapien (629 aa) initn: 2114 init1: 2114 opt: 2115 Z-score: 2478.9 bits: 468.4 E(): 2.2e-129 Smith-Waterman score: 2117; 93.103% identity (94.828% similar) in 348 aa overlap (29-376:12-349) 10 20 30 40 50 60 KIAA04 VETPPQGSVHSGHLGSVVGDPHTGTGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTP :...: :. .: :: : :: gi|341 WDLVAGLHPLGGQQSPMGQ--------KGHKDSL--YPCGGTP 10 20 30 70 80 90 100 110 120 KIAA04 ESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 ESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQD 40 50 60 70 80 90 130 140 150 160 170 180 KIAA04 ILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 ILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAA 100 110 120 130 140 150 190 200 210 220 230 240 KIAA04 LTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQT :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|341 LTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFVLQDENMVSFIKGGIKVRNSYQT 160 170 180 190 200 210 250 260 270 280 290 300 KIAA04 YKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 YKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYG 220 230 240 250 260 270 310 320 330 340 350 360 KIAA04 LLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|341 LLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIF 280 290 300 310 320 330 370 380 390 400 410 420 KIAA04 LFFAGRIEVIKGNIDAVSDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQ :::::::::::::::: gi|341 LFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYAD 340 350 360 370 380 390 >>gi|114556638|ref|XP_513400.2| PREDICTED: similar to ch (577 aa) initn: 1875 init1: 1875 opt: 1875 Z-score: 2197.9 bits: 416.3 E(): 1e-113 Smith-Waterman score: 1875; 99.647% identity (99.647% similar) in 283 aa overlap (94-376:15-297) 70 80 90 100 110 120 KIAA04 LHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILL :::::::::::::::::::::::::::::: gi|114 MTSAGGAPGALPAGTKESMYHSLTYATILEMQAMMTFDPQDILL 10 20 30 40 130 140 150 160 170 180 KIAA04 AGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTF 50 60 70 80 90 100 190 200 210 220 230 240 KIAA04 LQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKE ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: gi|114 LQGSSHGGAVRPRALHDPSHAYSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKE 110 120 130 140 150 160 250 260 270 280 290 300 KIAA04 LDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQ 170 180 190 200 210 220 310 320 330 340 350 360 KIAA04 LEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFF 230 240 250 260 270 280 370 380 390 400 410 420 KIAA04 AGRIEVIKGNIDAVSDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQPES ::::::::::::: gi|114 AGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLS 290 300 310 320 330 340 >>gi|55958004|emb|CAI13133.1| tetratricopeptide repeat d (188 aa) initn: 1260 init1: 1260 opt: 1260 Z-score: 1482.8 bits: 282.3 E(): 6.8e-74 Smith-Waterman score: 1260; 100.000% identity (100.000% similar) in 188 aa overlap (72-259:1-188) 50 60 70 80 90 100 KIAA04 ALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHS :::::::::::::::::::::::::::::: gi|559 MTALDLFLTNQFSEALSYLKPRTKESMYHS 10 20 30 110 120 130 140 150 160 KIAA04 LTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 LTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFT 40 50 60 70 80 90 170 180 190 200 210 220 KIAA04 EEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 EEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQD 100 110 120 130 140 150 230 240 250 260 270 280 KIAA04 ENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLP :::::::::::::::::::::::::::::::::::::: gi|559 ENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENH 160 170 180 290 300 310 320 330 340 KIAA04 TRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIE >>gi|55958008|emb|CAI13137.1| tetratricopeptide repeat d (297 aa) initn: 1046 init1: 1046 opt: 1046 Z-score: 1229.1 bits: 236.0 E(): 9.3e-60 Smith-Waterman score: 1772; 86.446% identity (87.349% similar) in 332 aa overlap (45-376:4-297) 20 30 40 50 60 70 KIAA04 GSVVGDPHTGTGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTA .:: . .:: :::::::::::::::: gi|559 MTSAGG--APGALP-AGTPESSLHEALDQCMTA 10 20 30 80 90 100 110 120 130 KIAA04 LDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 LDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQML 40 50 60 70 80 90 140 150 160 170 180 190 KIAA04 CQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVR ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 CQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQ--------- 100 110 120 130 140 200 210 220 230 240 250 KIAA04 PRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYC :::::::::::::::::::::::::::::::::: gi|559 --------------------------DENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYC 150 160 170 260 270 280 290 300 310 KIAA04 KGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 KGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFR 180 190 200 210 220 230 320 330 340 350 360 370 KIAA04 SVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 SVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNI 240 250 260 270 280 290 380 390 400 410 420 430 KIAA04 DAVSDGGPGRGWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQPESRGRRGPSGRAA :: gi|559 DA >>gi|55958006|emb|CAI13135.1| tetratricopeptide repeat d (319 aa) initn: 1046 init1: 1046 opt: 1046 Z-score: 1228.7 bits: 236.1 E(): 9.8e-60 Smith-Waterman score: 1772; 88.199% identity (88.199% similar) in 322 aa overlap (55-376:12-298) 30 40 50 60 70 80 KIAA04 TGNAGERGPRGKGARVLALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDLFLTNQFS : :::::::::::::::::::::::::: gi|559 MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFS 10 20 30 40 90 100 110 120 130 140 KIAA04 EALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 EALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSV 50 60 70 80 90 100 150 160 170 180 190 200 KIAA04 TDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHA ::::::::::::::::::::::::::::::::::::::::: gi|559 TDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQ------------------- 110 120 130 140 210 220 230 240 250 260 KIAA04 CSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEG :::::::::::::::::::::::::::::::::::::::::::: gi|559 ----------------DENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEG 150 160 170 180 270 280 290 300 310 320 KIAA04 GVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 GVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLC 190 200 210 220 230 240 330 340 350 360 370 380 KIAA04 YHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAVSDGGPGR :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|559 YHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEEC 250 260 270 280 290 300 390 400 410 420 430 440 KIAA04 GWGSLGVSQTSRKSGTCDILRDRIDWGRGGGPRENQPESRGRRGPSGRAAWEDKGGGGIC gi|559 CEAQQHWKQFHHM 310 >>gi|221042056|dbj|BAH12705.1| unnamed protein product [ (550 aa) initn: 1046 init1: 1046 opt: 1046 Z-score: 1225.6 bits: 236.3 E(): 1.5e-59 Smith-Waterman score: 1681; 88.525% identity (88.525% similar) in 305 aa overlap (72-376:1-270) 50 60 70 80 90 100 KIAA04 ALDSGGMDSSPSLPLIRTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHS :::::::::::::::::::::::::::::: gi|221 MTALDLFLTNQFSEALSYLKPRTKESMYHS 10 20 30 110 120 130 140 150 160 KIAA04 LTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 LTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFT 40 50 60 70 80 90 170 180 190 200 210 220 KIAA04 EEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQD :::::::::::::::::::::::: : gi|221 EEEIHAEVCYAECLLQRAALTFLQ-----------------------------------D 100 110 230 240 250 260 270 280 KIAA04 ENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 ENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLP 120 130 140 150 160 170 290 300 310 320 330 340 KIAA04 TRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 TRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIE 180 190 200 210 220 230 350 360 370 380 390 400 KIAA04 EAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAVSDGGPGRGWGSLGVSQTSRKSGTC ::::::::::::::::::::::::::::::::::: gi|221 EAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQRWKQFHHMCYWE 240 250 260 270 280 290 410 420 430 440 450 KIAA04 DILRDRIDWGRGGGPRENQPESRGRRGPSGRAAWEDKGGGGICGAWDFDWEI gi|221 LMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVELFR 300 310 320 330 340 350 453 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Wed Mar 4 21:58:28 2009 done: Wed Mar 4 22:03:04 2009 Total Scan time: 1537.940 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]