hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03203317/chunk_1/iprscan-20080502-03203317.nocrc
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Query sequence: KIAA0450
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00148                                                 265.4    4.4e-75   1
SM00149                                                 199.5    3.1e-55   1
SM00239                                                  86.4    3.4e-21   1
SM00054                                                  49.5    4.3e-10   2
SM00233                                                  29.5    0.00046   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      74   183 ..     1    82 []    29.5  0.00046
SM00054     1/2     199   227 ..     1    29 []    27.1   0.0024
SM00054     2/2     235   264 ..     1    29 []    22.4    0.063
SM00148     1/1     352   497 ..     1   182 []   265.4  4.4e-75
SM00149     1/1     652   766 ..     1   119 []   199.5  3.1e-55
SM00239     1/1     785   893 ..     1    92 []    86.4  3.4e-21

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 74 to 183: score 29.5, E = 0.00046
                   *->vikeGwLlkks..k.swkkryfvLfn..gvLlyyksk.kpkgsipLs
                         eG  ++k +++++   r+ +L+++++++ +  s++  k +i+++
    KIAA0450    74    AMQEGMQMVKLrgGsKGLVRFYYLDEhrSCIRWRPSRkNEKAKISID 120  

                   gc.svre.p.................cFeivt.dr..tlllqAeseeere
                   ++++v+e+  ++   + ++++ +++ cF i++++++++l l   s+e ++
    KIAA0450   121 SIqEVSEgRqsevfqrypdgsfdpncCFSIYHgSHreSLDLVSTSSEVAR 170  

                   eWvealqsaiaka<-*
                    Wv+ l+ ++a     
    KIAA0450   171 TWVTGLRYLMAGI    183  

SM00054: domain 1 of 2, from 199 to 227: score 27.1, E = 0.0024
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       lk+ F+e+Dk+gdG ++  E ++ll++l   
    KIAA0450   199    WLKQTFDEADKNGDGSLSIGEVLQLLHKL    227  

SM00054: domain 2 of 2, from 235 to 264: score 22.4, E = 0.063
                   *->elkeaFrefDkD.gdGkIdfeEfkallksl<-*
                       +k++Fre+D+D++ G++ feEf+a+ k++   
    KIAA0450   235    RVKQMFREADTDdHQGTLGFEEFCAFYKMM    264  

SM00148: domain 1 of 1, from 352 to 497: score 265.4, E = 4.4e-75
                   *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR
                      qDm++PLshYfI sSHN                              
    KIAA0450   352    QDMTQPLSHYFITSSHN------------------------------ 368  

                   FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft
                    TYL g+Ql + s v +Y  +L+aGcRcvE DcwdgpdgeP+++HG+T+t
    KIAA0450   369 -TYLVGDQLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTLT 417  

                   skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF
                   ski ++dV+e+I+k+AF++ +yP  vIlS+enHcs+ qQ+kmaq+++ i+
    KIAA0450   418 SKILFKDVIETINKYAFIKNEYP--VILSIENHCSVIQQKKMAQYLTDIL 465  

                   gdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-*
                   gd+L   +l s+++++   LPsP++LkgKIL+kgK   
    KIAA0450   466 GDKL---DLSSVSSEDATTLPSPQMLKGKILVKGK    497  

SM00149: domain 1 of 1, from 652 to 766: score 199.5, E = 3.1e-55
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      ls+Lv y ++v  + +e +  +   ++++sSfsEtk a ++l+++p+
    KIAA0450   652    LSDLVKYTKSVATHDIEMEAAS---SWQVSSFSETK-AHQILQQKPA 694  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   + +r+Nq+qLsR+YP+  RvDSSNYnPq+fWnaGcQMVALN+Q  ++++q
    KIAA0450   695 QYLRFNQQQLSRIYPSSYRVDSSNYNPQPFWNAGCQMVALNYQSEGRMLQ 744  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   lN ++F+aNGgCGYVLKP ++    
    KIAA0450   745 LNRAKFSANGGCGYVLKPGCMC    766  

SM00239: domain 1 of 1, from 785 to 893: score 86.4, E = 3.4e-21
                   *->tLtvkiisArnLp..............DPYVkvs...........kT
                      +L ++iis+++Lp+++++  ++++   DP+V+v+  + + + ++ +T
    KIAA0450   785    QLVLRIISGQQLPkprdsmlgdrgeiiDPFVEVEiiglpvdcsreQT 831  

                   kvvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGr
                   +vv +++  fNP+W+E   t++F v+ ++ + +++ V+D+++ ++dfiG+
    KIAA0450   832 RVVDDNG--FNPTWEE---TLVFMVHMpeiAlVRFLVWDHdpigrDFIGQ 876  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                    t+               +s++++g+rh  l   
    KIAA0450   877 RTLA--------------FSSMMpGYRHvYL    893  

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