hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03171890/chunk_1/iprscan-20080502-03171890.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0448 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05040.4.ls Heparan sulfate 2-O-sulfotransferase (HS2ST) 831.0 5.7e-247 1 PF05040.4.fs Heparan sulfate 2-O-sulfotransferase (HS2ST) 829.2 2.1e-246 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05040.4.fs 1/1 15 360 .. 1 428 [] 829.2 2.1e-246 PF05040.4.ls 1/1 15 360 .. 1 428 [] 831.0 5.7e-247 Alignments of top-scoring domains: PF05040.4.fs: domain 1 of 1, from 15 to 360: score 829.2, E = 2.1e-246 *->kaskdklLavppmgaiavaLgslkrrvnkLkesrvkLEddGFCmATL +++ ++lLav+ a+ava+++l+++++kL+esr kLE++ KIAA0448 15 PPK-LQLLAVV---AFAVAMLFLENQIQKLEESRSKLERA------- 50 LVFClgeHllkeleenddrLalDqlrqgttNSTYLDDHGPPdSevfdFee +++H+++e+e+++++ D++rq++t +d+ee KIAA0448 51 ----IARHEVREIEQRHTM---DGPRQDAT---------------LDEEE 78 dLvNNTKYAEVDFVvYNRVPKtGStSfvnlaydLckkNgFTHvlhinsth d+v ++YNRVPKt+StSf+n+aydLc+kN++ Hvlhin+t+ KIAA0448 79 DMV----------IIYNRVPKTASTSFTNIAYDLCAKNKY-HVLHINTTK 117 NkiVlskqeQvelikNisTweeMKPalYhgHiayLnFsrFgvldKPIYIN N++V+s+q+Qv+++kNi+ w eMKP++YhgH++yL+F++Fgv++KPIYIN KIAA0448 118 NNPVMSLQDQVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYIN 167 lIRDPidRlvSyYYFlRFGDWRGeYRdMPnlrrPSmkkeenkiPmPSEEF +IRDPi+RlvSyYYFlRFGD +YR P+lrr +k+++k+ KIAA0448 168 VIRDPIERLVSYYYFLRFGD---DYR--PGLRR---RKQGDKK------- 202 mNLdfDECVlekdPdCspkrlwlqIPVGDHRRqTLFFCGhnqeLCwepGS +fDECV+e+++dC+p++lwlqIP FFCGh++e Cw++GS KIAA0448 203 ---TFDECVAEGGSDCAPEKLWLQIP---------FFCGHSSE-CWNVGS 239 eWAldqAKrNvenEYfLVGvtEeledfllLLEafLPRyFrGakeiYkdPe +WA+dqAK+N++nEYfLVGvtEeledf++LLEa+LPR+FrGa+e+Y++ KIAA0448 240 RWAMDQAKYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRT-- 287 kdklShlrvTvkKrvPSdeTikiLqkrdIlrmEnEFYeFakeQFyLqfaK +k+Shlr+T++K++P+++Ti++Lq++dI++mEnEFYeFa+eQF qf+ KIAA0448 288 -GKKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQF--QFI- 333 FGLksHvskkklgkrffiltqkftyEkIedk<-* ++H++++k+g++++ l+q+f+yEkI++k KIAA0448 334 ---RAHAVREKDGDLYI-LAQNFFYEKIYPK 360 PF05040.4.ls: domain 1 of 1, from 15 to 360: score 831.0, E = 5.7e-247 *->kaskdklLavppmgaiavaLgslkrrvnkLkesrvkLEddGFCmATL +++ ++lLav+ a+ava+++l+++++kL+esr kLE++ KIAA0448 15 PPK-LQLLAVV---AFAVAMLFLENQIQKLEESRSKLERA------- 50 LVFClgeHllkeleenddrLalDqlrqgttNSTYLDDHGPPdSevfdFee +++H+++e+e+++++ D++rq++t +d+ee KIAA0448 51 ----IARHEVREIEQRHTM---DGPRQDAT---------------LDEEE 78 dLvNNTKYAEVDFVvYNRVPKtGStSfvnlaydLckkNgFTHvlhinsth d+v ++YNRVPKt+StSf+n+aydLc+kN++ Hvlhin+t+ KIAA0448 79 DMV----------IIYNRVPKTASTSFTNIAYDLCAKNKY-HVLHINTTK 117 NkiVlskqeQvelikNisTweeMKPalYhgHiayLnFsrFgvldKPIYIN N++V+s+q+Qv+++kNi+ w eMKP++YhgH++yL+F++Fgv++KPIYIN KIAA0448 118 NNPVMSLQDQVRFVKNITSWKEMKPGFYHGHVSYLDFAKFGVKKKPIYIN 167 lIRDPidRlvSyYYFlRFGDWRGeYRdMPnlrrPSmkkeenkiPmPSEEF +IRDPi+RlvSyYYFlRFGD +YR P+lrr +k+++k+ KIAA0448 168 VIRDPIERLVSYYYFLRFGD---DYR--PGLRR---RKQGDKK------- 202 mNLdfDECVlekdPdCspkrlwlqIPVGDHRRqTLFFCGhnqeLCwepGS +fDECV+e+++dC+p++lwlqIP FFCGh++e Cw++GS KIAA0448 203 ---TFDECVAEGGSDCAPEKLWLQIP---------FFCGHSSE-CWNVGS 239 eWAldqAKrNvenEYfLVGvtEeledfllLLEafLPRyFrGakeiYkdPe +WA+dqAK+N++nEYfLVGvtEeledf++LLEa+LPR+FrGa+e+Y++ KIAA0448 240 RWAMDQAKYNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRT-- 287 kdklShlrvTvkKrvPSdeTikiLqkrdIlrmEnEFYeFakeQFyLqfaK +k+Shlr+T++K++P+++Ti++Lq++dI++mEnEFYeFa+eQF qf+ KIAA0448 288 -GKKSHLRKTTEKKLPTKQTIAKLQQSDIWKMENEFYEFALEQF--QFI- 333 FGLksHvskkklgkrffiltqkftyEkIedk<-* ++H++++k+g++++ l+q+f+yEkI++k KIAA0448 334 ---RAHAVREKDGDLYI-LAQNFFYEKIYPK 360 //