hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03054213/chunk_1/iprscan-20080502-03054213.nocrc
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Query sequence: KIAA0441
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 211.8    6.1e-59   8
SM00225                                                 101.0    1.4e-25   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      42   138 ..     1   114 []   101.0  1.4e-25
SM00355      1/8     299   321 ..     1    23 []    20.0     0.34
SM00355      2/8     327   349 ..     1    23 []    29.2  0.00056
SM00355      3/8     355   377 ..     1    23 []    26.7   0.0031
SM00355      4/8     383   405 ..     1    23 []    28.4    0.001
SM00355      5/8     411   433 ..     1    23 []    22.0    0.083
SM00355      6/8     439   461 ..     1    23 []    33.1  3.8e-05
SM00355      7/8     467   489 ..     1    23 []    24.4    0.016
SM00355      8/8     495   517 ..     1    23 []    28.1   0.0013

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 42 to 138: score 101.0, E = 1.4e-25
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD+tl+v++         ++f+a  Hka+Laa+   S+yF  +f ++
    KIAA0441    42    CDITLIVEN---------VHFRA--HKALLAAS---SEYFSMMFAEe 74   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   ++ +++ + l++      + +++F++lL+f+Yt+ l+ +e+   + e++L
    KIAA0441    75 geigqsiYMLEG------MVADTFGILLEFIYTgYLHASEK---STEQIL 115  

                   elAdfldSYGqip.lvelCeefllknl<-*
                   ++A+fl    ++ +lv++ ++f  +++   
    KIAA0441   116 ATAQFL----KVYdLVKAYTDFQNNHS    138  

SM00355: domain 1 of 8, from 299 to 321: score 20.0, E = 0.34
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C+  Cgk+f+  + L  H+r+H   
    KIAA0441   299    ARCKD-CGKVFKYNhFLAIHQRSH    321  

SM00355: domain 2 of 8, from 327 to 349: score 29.2, E = 0.00056
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f +k++L+ H r+H   
    KIAA0441   327    FKCNE-CGKGFAQKhSLQVHTRMH    349  

SM00355: domain 3 of 8, from 355 to 377: score 26.7, E = 0.0031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k  ++k++L +Hm  H   
    KIAA0441   355    YTCTV-CSKALTTKhSLLEHMSLH    377  

SM00355: domain 4 of 8, from 383 to 405: score 28.4, E = 0.001
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+ ++Lk H+rvH   
    KIAA0441   383    FTCDQ-CGKYFSQNrQLKSHYRVH    405  

SM00355: domain 5 of 8, from 411 to 433: score 22.0, E = 0.083
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C+  C+++f + ++Lk+H+r+H   
    KIAA0441   411    PECKD-CHRKFMDVsQLKKHLRTH    433  

SM00355: domain 6 of 8, from 439 to 461: score 33.1, E = 3.8e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cgksf+ k++L+ H+r+H   
    KIAA0441   439    FTCEI-CGKSFTAKsSLQTHIRIH    461  

SM00355: domain 7 of 8, from 467 to 489: score 24.4, E = 0.016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C i Cgksfs+ +a +rH   H   
    KIAA0441   467    YSCGI-CGKSFSDSsAKRRHCILH    489  

SM00355: domain 8 of 8, from 495 to 517: score 28.1, E = 0.0013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C+ +f + ++Lk H+++H   
    KIAA0441   495    FSCPE-CNLQFARLdNLKAHLKIH    517  

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