hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03054213/chunk_1/iprscan-20080502-03054213.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0441 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 230.8 2.7e-66 8 PF00096.16.fs Zinc finger, C2H2 type 215.5 1.1e-61 8 PF00651.21.ls BTB/POZ domain 135.7 1.2e-37 1 PF00651.21.fs BTB/POZ domain 133.9 4.1e-37 1 PF02178.9.ls AT hook motif 18.9 0.012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 32 138 .. 1 135 [] 133.9 4.1e-37 PF00651.21.ls 1/1 32 138 .. 1 135 [] 135.7 1.2e-37 PF02178.9.ls 1/1 164 176 .. 1 13 [] 18.9 0.012 PF00096.16.ls 1/8 299 321 .. 1 24 [] 25.4 0.00019 PF00096.16.fs 1/8 299 321 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 2/8 327 349 .. 1 24 [] 32.3 1.5e-06 PF00096.16.fs 2/8 327 349 .. 1 24 [] 30.4 2.5e-06 PF00096.16.ls 3/8 355 377 .. 1 24 [] 24.6 0.00033 PF00096.16.fs 3/8 355 377 .. 1 24 [] 22.6 0.00022 PF00096.16.ls 4/8 383 405 .. 1 24 [] 31.5 2.8e-06 PF00096.16.fs 4/8 383 405 .. 1 24 [] 29.5 4.2e-06 PF00096.16.ls 5/8 411 433 .. 1 24 [] 21.2 0.0034 PF00096.16.ls 6/8 439 461 .. 1 24 [] 37.3 4.9e-08 PF00096.16.fs 6/8 439 461 .. 1 24 [] 35.3 1.5e-07 PF00096.16.fs 7/8 467 489 .. 1 24 [] 24.7 6.6e-05 PF00096.16.ls 7/8 467 489 .. 1 24 [] 26.7 7.8e-05 PF00096.16.fs 8/8 495 517 .. 1 24 [] 29.9 3.4e-06 PF00096.16.ls 8/8 495 517 .. 1 24 [] 31.8 2.2e-06 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 32 to 138: score 133.9, E = 4.1e-37 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++++rk+g+lcD+tL v+ +++f+AHKa Laa+S+YF ++ KIAA0441 32 FEDQRKKGFLCDITLIVE--------NVHFRAHKALLAASSEYFSMM 70 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F e+ +s +++le++ +++f++lLefiYtg l + KIAA0441 71 FAEE-------GEIGQS-IYMLEGMVADTFGILLEFIYTGYLHAS----- 107 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+ e++La+A ++l++++lv+a+++f +++ KIAA0441 108 ------EKSTEQILATA-QFLKVYDLVKAYTDFQNNHS 138 PF00651.21.ls: domain 1 of 1, from 32 to 138: score 135.7, E = 1.2e-37 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal ++++rk+g+lcD+tL v+ +++f+AHKa Laa+S+YF ++ KIAA0441 32 FEDQRKKGFLCDITLIVE--------NVHFRAHKALLAASSEYFSMM 70 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F e+ +s +++le++ +++f++lLefiYtg l + KIAA0441 71 FAEE-------GEIGQS-IYMLEGMVADTFGILLEFIYTGYLHAS----- 107 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* e+ e++La+A ++l++++lv+a+++f +++ KIAA0441 108 ------EKSTEQILATA-QFLKVYDLVKAYTDFQNNHS 138 PF02178.9.ls: domain 1 of 1, from 164 to 176: score 18.9, E = 0.012 *->kRkRGRPrKaata<-* kRkRGRP+K +t KIAA0441 164 KRKRGRPKKVNTL 176 PF00096.16.ls: domain 1 of 8, from 299 to 321: score 25.4, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCgk+F+ ++ L H+r+H KIAA0441 299 ARCK-DCGKVFKYNHFLAIHQRSH 321 PF00096.16.fs: domain 1 of 8, from 299 to 321: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCgk+F+ ++ L H+r+H KIAA0441 299 ARCK-DCGKVFKYNHFLAIHQRSH 321 PF00096.16.ls: domain 2 of 8, from 327 to 349: score 32.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F +k++L+ H r+H KIAA0441 327 FKCN-ECGKGFAQKHSLQVHTRMH 349 PF00096.16.fs: domain 2 of 8, from 327 to 349: score 30.4, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F +k++L+ H r+H KIAA0441 327 FKCN-ECGKGFAQKHSLQVHTRMH 349 PF00096.16.ls: domain 3 of 8, from 355 to 377: score 24.6, E = 0.00033 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+ ++k++L H+ H KIAA0441 355 YTCT-VCSKALTTKHSLLEHMSLH 377 PF00096.16.fs: domain 3 of 8, from 355 to 377: score 22.6, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C k+ ++k++L H+ H KIAA0441 355 YTCT-VCSKALTTKHSLLEHMSLH 377 PF00096.16.ls: domain 4 of 8, from 383 to 405: score 31.5, E = 2.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs++ +Lk+H r+H KIAA0441 383 FTCD-QCGKYFSQNRQLKSHYRVH 405 PF00096.16.fs: domain 4 of 8, from 383 to 405: score 29.5, E = 4.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk Fs++ +Lk+H r+H KIAA0441 383 FTCD-QCGKYFSQNRQLKSHYRVH 405 PF00096.16.ls: domain 5 of 8, from 411 to 433: score 21.2, E = 0.0034 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dC+++F + s+Lk+HlrtH KIAA0441 411 PECK-DCHRKFMDVSQLKKHLRTH 433 PF00096.16.ls: domain 6 of 8, from 439 to 461: score 37.3, E = 4.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ ks+L++H+r+H KIAA0441 439 FTCE-ICGKSFTAKSSLQTHIRIH 461 PF00096.16.fs: domain 6 of 8, from 439 to 461: score 35.3, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ ks+L++H+r+H KIAA0441 439 FTCE-ICGKSFTAKSSLQTHIRIH 461 PF00096.16.fs: domain 7 of 8, from 467 to 489: score 24.7, E = 6.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs++s +rH H KIAA0441 467 YSCG-ICGKSFSDSSAKRRHCILH 489 PF00096.16.ls: domain 7 of 8, from 467 to 489: score 26.7, E = 7.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +CgksFs++s +rH H KIAA0441 467 YSCG-ICGKSFSDSSAKRRHCILH 489 PF00096.16.fs: domain 8 of 8, from 495 to 517: score 29.9, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+ F r +nLk+Hl++H KIAA0441 495 FSCP-ECNLQFARLDNLKAHLKIH 517 PF00096.16.ls: domain 8 of 8, from 495 to 517: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+ F r +nLk+Hl++H KIAA0441 495 FSCP-ECNLQFARLDNLKAHLKIH 517 //