hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03035915/chunk_1/iprscan-20080502-03035915.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0440 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 46.5 3.5e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/1 976 1042 .. 1 80 [] 46.5 3.5e-09 Alignments of top-scoring domains: SM00228: domain 1 of 1, from 976 to 1042: score 46.5, E = 3.5e-09 *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets g+lGf + +v++v+p + A++aG L+ G +++e+ + KIAA0440 976 GQLGFHVNYEGIVADVEPYGYAWQAG------LRQGSRLVEICK-VA 1015 vegltheeavdllkkaggggvGekvtLtvlRgg<-* v +l+he+ +dll+ + +v+++++++ KIAA0440 1016 VATLSHEQMIDLLRTSV------TVKVVIIPPH 1042 //