hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03035915/chunk_1/iprscan-20080502-03035915.nocrc
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Query sequence: KIAA0440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02145.6.fs Rap/ran-GAP                                    454.6     2e-137   1
PF02145.6.ls Rap/ran-GAP                                    456.5   3.2e-134   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          27.8    3.9e-07   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          29.7    9.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02145.6.fs   1/1     642   830 ..     1   192 []   454.6   2e-137
PF02145.6.ls   1/1     642   830 ..     1   192 []   456.5 3.2e-134
PF00595.14.fs   1/1     967  1039 ..     1    86 []    27.8  3.9e-07
PF00595.14.ls   1/1     967  1039 ..     1    86 []    29.7  9.8e-06

Alignments of top-scoring domains:
PF02145.6.fs: domain 1 of 1, from 642 to 830: score 454.6, E = 2e-137
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne+a+paF+eFL+lLG+rvrLK+fe+   Yr++LD+k+d+TGth
    KIAA0440   642    MYNNESAGPAFEEFLQLLGERVRLKGFEK---YRAQLDTKTDSTGTH 685  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd+eimFHVST+LPyt+++kqqL+rKRHIGNDiVtIVFqe+G++
    KIAA0440   686 SLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQ 735  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pFsp++IrShFqhVfviVr+++p++++v+Y+V+vtr++Dvp+fgp++pkg
    KIAA0440   736 PFSPKNIRSHFQHVFVIVRVHNPCSDSVCYSVAVTRSRDVPSFGPPIPKG 785  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+++Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
    KIAA0440   786 VTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    830  

PF02145.6.ls: domain 1 of 1, from 642 to 830: score 456.5, E = 3.2e-134
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+Ne+a+paF+eFL+lLG+rvrLK+fe+   Yr++LD+k+d+TGth
    KIAA0440   642    MYNNESAGPAFEEFLQLLGERVRLKGFEK---YRAQLDTKTDSTGTH 685  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Yttykd+eimFHVST+LPyt+++kqqL+rKRHIGNDiVtIVFqe+G++
    KIAA0440   686 SLYTTYKDYEIMFHVSTMLPYTPNNKQQLLRKRHIGNDIVTIVFQEPGAQ 735  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pFsp++IrShFqhVfviVr+++p++++v+Y+V+vtr++Dvp+fgp++pkg
    KIAA0440   736 PFSPKNIRSHFQHVFVIVRVHNPCSDSVCYSVAVTRSRDVPSFGPPIPKG 785  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   ++f+k+++Fr+flLak+iNaena+hk++kF+++atrtRq++L+dL   
    KIAA0440   786 VTFPKSNVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDL    830  

PF00595.14.fs: domain 1 of 1, from 967 to 1039: score 27.8, E = 3.9e-07
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+tl ++ + g lGf +          +++v++v p  g A ++G L
    KIAA0440   967    EMTLRRN-GLGQLGFHVN--------YEGIVADVEPY-GYAWQAG-L 1002 

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ lshe+ +++l+ s+  +v+++++   
    KIAA0440  1003 RQGSRLVEICKVAVATLSHEQMIDLLRTSV--TVKVVII    1039 

PF00595.14.ls: domain 1 of 1, from 967 to 1039: score 29.7, E = 9.8e-06
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e+tl ++ + g lGf +          +++v++v p  g A ++G L
    KIAA0440   967    EMTLRRN-GLGQLGFHVN--------YEGIVADVEPY-GYAWQAG-L 1002 

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + G ++++++ + ++ lshe+ +++l+ s+  +v+++++   
    KIAA0440  1003 RQGSRLVEICKVAVATLSHEQMIDLLRTSV--TVKVVII    1039 

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