# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj00450.fasta.huge -Q ../query/KIAA0438.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0438, 726 aa vs ./tmplib.23147 library 1986779 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.0561+/-0.00588; mu= 12.3589+/- 0.402 mean_var=137.5567+/-33.184, 0's: 0 Z-trim: 9 B-trim: 7 in 1/39 Lambda= 0.109354 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1810 ( 579 res) fk03376 ( 579) 198 42.7 0.00012 KIAA1214 ( 462 res) fh01431 ( 462) 188 41.0 0.0003 KIAA1100 ( 444 res) hk07907 ( 444) 176 39.1 0.0011 KIAA1133 ( 891 res) hg03758b ( 891) 170 38.5 0.0034 KIAA0675 ( 1217 res) hk02566 (1217) 168 38.4 0.0051 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 209 init1: 180 opt: 198 Z-score: 175.4 bits: 42.7 E(): 0.00012 Smith-Waterman score: 202; 36.047% identity (56.977% similar) in 86 aa overlap (632-717:241-317) 610 620 630 640 650 660 KIAA04 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK :. :: : :.. : :: :.. KIAA18 MYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNV-------CIICREEMVT 220 230 240 250 260 670 680 690 700 710 720 KIAA04 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPSNDS : .:::.:.:: :. :.:.. :::.:: : . :.. : :: ..:: KIAA18 G--AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH 270 280 290 300 310 320 KIAA04 IAEAP KIAA18 PPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSG 330 340 350 360 370 380 >>KIAA1214 ( 462 res) fh01431 (462 aa) initn: 135 init1: 135 opt: 188 Z-score: 168.1 bits: 41.0 E(): 0.0003 Smith-Waterman score: 188; 31.373% identity (59.804% similar) in 102 aa overlap (626-719:275-376) 600 610 620 630 640 650 KIAA04 ALEERLAQAMETALAHLESLAVDVEVANPPASKESIDGLP-ETLVLEDHTAIGQEQCCPI :.:..:. : .:. :. . .. . : . KIAA12 IVSLLERNITVTMYITIGTRNLQKYRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAV 250 260 270 280 290 300 660 670 680 690 700 KIAA04 CCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHF------PPAVIEASAAPS : : .:.. :::.:.::: ::. :: :::.:. .. :: . . :. KIAA12 CIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPT 310 320 330 340 350 360 710 720 KIAA04 S-EPDPDAPPSNDSIAEAP . : . .::.: KIAA12 DFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGDVIFTTNS 370 380 390 400 410 420 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 185 init1: 138 opt: 176 Z-score: 158.0 bits: 39.1 E(): 0.0011 Smith-Waterman score: 176; 33.333% identity (61.111% similar) in 90 aa overlap (605-693:346-433) 580 590 600 610 620 630 KIAA04 ADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPA-SKESIDG ::. : : .:: . :.: . .: .:. KIAA11 FLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALL-NLAERLGDAKPRGLTKADIEQ 320 330 340 350 360 370 640 650 660 670 680 690 KIAA04 LPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCR :: . .. . ... : .: :.. .. :::.: :: ::. ::. . :::.:: KIAA11 LP-SYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 380 390 400 410 420 430 700 710 720 KIAA04 RHFPPAVIEASAAPSSEPDPDAPPSNDSIAEAP KIAA11 ADASEVPREAE 440 >>KIAA1133 ( 891 res) hg03758b (891 aa) initn: 158 init1: 158 opt: 170 Z-score: 149.3 bits: 38.5 E(): 0.0034 Smith-Waterman score: 170; 28.906% identity (54.688% similar) in 128 aa overlap (584-709:184-301) 560 570 580 590 600 610 KIAA04 LEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALA--H .: : .:. . :..: .: . :: KIAA11 KVARARIQHRPPRQPTEYFDMGIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQA 160 170 180 190 200 210 620 630 640 650 660 670 KIAA04 LESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCH ::.. . .. . .:. : .:: . .. . : :: .:: . .:: KIAA11 LEKMETRKFNSKSKGRREGSCGALDTL------SSSSTSDCAICLEKYIDGEELRVIPCT 220 230 240 250 260 680 690 700 710 720 KIAA04 HFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPSNDSIAEAP : ::. ::. :: . ::: ::.. .:: .. ::. KIAA11 HRFHRKCVDPWLLQHHTCPHCRHN----IIEQKGNPSAVCVETSNLSRGRQQRVTLPVHY 270 280 290 300 310 320 KIAA11 PGRVHRTNAIPAYPTRTSMDSHGNPVTLLTMDRHGEQSLYSPQTPAYIRSYPPLHLDHSL 330 340 350 360 370 380 >>KIAA0675 ( 1217 res) hk02566 (1217 aa) initn: 187 init1: 146 opt: 168 Z-score: 146.0 bits: 38.4 E(): 0.0051 Smith-Waterman score: 168; 41.667% identity (66.667% similar) in 48 aa overlap (648-695:1153-1199) 620 630 640 650 660 670 KIAA04 DVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKP .:. : . : : .. . . ::: : :: KIAA06 AQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPC-VICHENLSPENLSVLPCAHKFHAQ 1130 1140 1150 1160 1170 1180 680 690 700 710 720 KIAA04 CVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPSNDSIAEAP :. ::...::::.:: : KIAA06 CIRPWLMQQGTCPTCRLHVLLPEEFPGHPSRQLPKI 1190 1200 1210 726 residues in 1 query sequences 1986779 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:21:35 2008 done: Thu Dec 18 15:21:36 2008 Total Scan time: 0.550 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]