hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02590287/chunk_1/iprscan-20080502-02590287.nocrc
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Query sequence: KIAA0437
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00384                                                  49.6    4.1e-10   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00384     1/3     593   605 ..     1    13 []    15.9     0.76
SM00384     2/3    1025  1037 ..     1    13 []    18.1     0.31
SM00384     3/3    1460  1472 ..     1    13 []    15.5      0.9

Alignments of top-scoring domains:
SM00384: domain 1 of 3, from 593 to 605: score 15.9, E = 0.76
                   *->kRkRGRPrKaksa<-*
                      k+kRGRP+K++     
    KIAA0437   593    KKKRGRPKKQPLL    605  

SM00384: domain 2 of 3, from 1025 to 1037: score 18.1, E = 0.31
                   *->kRkRGRPrKaksa<-*
                      k+kRGRP+K+ ++   
    KIAA0437  1025    KKKRGRPAKTNDT    1037 

SM00384: domain 3 of 3, from 1460 to 1472: score 15.5, E = 0.9
                   *->kRkRGRPrKaksa<-*
                      k++RGRPrK++++   
    KIAA0437  1460    KKRRGRPRKQPTQ    1472 

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