hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02590287/chunk_1/iprscan-20080502-02590287.nocrc
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Query sequence: KIAA0437
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02178.9.fs AT hook motif                                   45.4    9.9e-13   3
PF02178.9.ls AT hook motif                                   51.3    2.9e-12   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02178.9.ls   1/3     593   605 ..     1    13 []    16.7    0.028
PF02178.9.ls   2/3    1025  1037 ..     1    13 []    18.5    0.014
PF02178.9.ls   3/3    1460  1472 ..     1    13 []    16.1    0.035

Alignments of top-scoring domains:
PF02178.9.ls: domain 1 of 3, from 593 to 605: score 16.7, E = 0.028
                   *->kRkRGRPrKaata<-*
                      k+kRGRP+K++     
    KIAA0437   593    KKKRGRPKKQPLL    605  

PF02178.9.ls: domain 2 of 3, from 1025 to 1037: score 18.5, E = 0.014
                   *->kRkRGRPrKaata<-*
                      k+kRGRP+K++++   
    KIAA0437  1025    KKKRGRPAKTNDT    1037 

PF02178.9.ls: domain 3 of 3, from 1460 to 1472: score 16.1, E = 0.035
                   *->kRkRGRPrKaata<-*
                      k++RGRPrK++t+   
    KIAA0437  1460    KKRRGRPRKQPTQ    1472 

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