hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02554739/chunk_1/iprscan-20080502-02554739.nocrc
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Query sequence: KIAA0435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF05041.5.ls Pecanex protein (C-terminus)                  478.8     6e-141   1
PF05041.5.fs Pecanex protein (C-terminus)                  476.8   2.4e-140   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF05041.5.fs   1/1     275   507 ..     1   238 []   476.8 2.4e-140
PF05041.5.ls   1/1     275   507 ..     1   238 []   478.8   6e-141

Alignments of top-scoring domains:
PF05041.5.fs: domain 1 of 1, from 275 to 507: score 476.8, E = 2.4e-140
                   *->eeiakvkvdKdfdvelVtlCyalsLlgrrsLatasghilssavEsFl
                      e+      d d d++lVtl +al+ lgrr+L+ta  h +   ++sFl
    KIAA0435   275    EP--STTLDSDEDSPLVTLSFALCTLGRRALGTAA-HNMAISLDSFL 318  

                   YGLHaLFKGdfrItsvrdeWvfadmeLlrqvvlpAvrmaLKLhqDhftlp
                   YGLH LFKGdfrIt+ rdeWvfadm+Ll++vv+pA+rm+LKLhqD+ft p
    KIAA0435   319 YGLHVLFKGDFRITA-RDEWVFADMDLLHKVVAPAIRMSLKLHQDQFTCP 367  

                   defddpreLykaieeyerdlvIshesDpkWrsAiLankPsLlaLrhvmdd
                   de++dp +Ly+ai+++e++ vI he+Dp+Wr A+L nk  Ll Lrhv d 
    KIAA0435   368 DEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLSNKEELLTLRHVVDE 417  

                   GideyriimLneryLsirViKLNrEcVRglWAgqqqELiylrNrnpERgS
                   G dey++imL + +Ls++ViK+N+EcVRglWAgqqqELi+lrNrnpERgS
    KIAA0435   418 GADEYKVIMLHRSFLSFKVIKVNKECVRGLWAGQQQELIFLRNRNPERGS 467  

                   IQnakqlLRNlinssadqPiGYPIYvSkPLTTSyadshiqL<-*
                   IQn kq+LRNlinss+dqP+GYP YvS PLTTSy  +h qL   
    KIAA0435   468 IQNNKQVLRNLINSSCDQPLGYPMYVS-PLTTSYLGTHRQL    507  

PF05041.5.ls: domain 1 of 1, from 275 to 507: score 478.8, E = 6e-141
                   *->eeiakvkvdKdfdvelVtlCyalsLlgrrsLatasghilssavEsFl
                      e+      d d d++lVtl +al+ lgrr+L+ta  h +   ++sFl
    KIAA0435   275    EP--STTLDSDEDSPLVTLSFALCTLGRRALGTAA-HNMAISLDSFL 318  

                   YGLHaLFKGdfrItsvrdeWvfadmeLlrqvvlpAvrmaLKLhqDhftlp
                   YGLH LFKGdfrIt+ rdeWvfadm+Ll++vv+pA+rm+LKLhqD+ft p
    KIAA0435   319 YGLHVLFKGDFRITA-RDEWVFADMDLLHKVVAPAIRMSLKLHQDQFTCP 367  

                   defddpreLykaieeyerdlvIshesDpkWrsAiLankPsLlaLrhvmdd
                   de++dp +Ly+ai+++e++ vI he+Dp+Wr A+L nk  Ll Lrhv d 
    KIAA0435   368 DEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLSNKEELLTLRHVVDE 417  

                   GideyriimLneryLsirViKLNrEcVRglWAgqqqELiylrNrnpERgS
                   G dey++imL + +Ls++ViK+N+EcVRglWAgqqqELi+lrNrnpERgS
    KIAA0435   418 GADEYKVIMLHRSFLSFKVIKVNKECVRGLWAGQQQELIFLRNRNPERGS 467  

                   IQnakqlLRNlinssadqPiGYPIYvSkPLTTSyadshiqL<-*
                   IQn kq+LRNlinss+dqP+GYP YvS PLTTSy  +h qL   
    KIAA0435   468 IQNNKQVLRNLINSSCDQPLGYPMYVS-PLTTSYLGTHRQL    507  

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