hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02472847/chunk_1/iprscan-20080502-02472847.nocrc
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Query sequence: KIAA0430
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  41.2    1.4e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2     277   345 ..     1   121 []     9.5     0.47
SM00360    2/2     556   630 ..     1   121 []    31.7   0.0001

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 277 to 345: score 9.5, E = 0.47
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       l+V NL  p + + + + +                ++  +    ++
    KIAA0430   277    LLYVYNL--PANKDGKSVSNRL--------------RRLSDNCGGKV 307  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +                              + a  +F ++++Ae+A  +
    KIAA0430   308 LSITG--------------------------CSAILRFINQDSAERA--Q 329  

                   ealnaskGkeledgGrptlglrVe<-*
                   + +    + ++   G++   + V+   
    KIAA0430   330 KRME---NEDV--FGNR---IIVS    345  

SM00360: domain 2 of 2, from 556 to 630: score 31.7, E = 0.0001
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       + V+N+  ++  + ++L++l            e+ +++Gkv+sv +
    KIAA0430   556    DVQVSNI--DYRLSRKELQQLL----------QEAFARHGKVKSVEL 590  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    ++ d                       + k  a V++e+ +dA  A  +
    KIAA0430   591 SPHTD----------------------YQLK--AVVQMENLQDAIGA--V 614  

                   ealnaskGkeledgGrptlglrVe<-*
                   + l+    +++  g ++   + V+   
    KIAA0430   615 NSLH---RYKI--GSKK---ILVS    630  

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