hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02472847/chunk_1/iprscan-20080502-02472847.nocrc
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Query sequence: KIAA0430
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04396.4.ls Protein of unknown function, DUF537            170.2      5e-48   1
PF04396.4.fs Protein of unknown function, DUF537            168.3    1.8e-47   1
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     26.6    1.1e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04396.4.fs   1/1     115   259 ..     1   166 []   168.3  1.8e-47
PF04396.4.ls   1/1     115   259 ..     1   166 []   170.2    5e-48

Alignments of top-scoring domains:
PF04396.4.fs: domain 1 of 1, from 115 to 259: score 168.3, E = 1.8e-47
                   *->aktsVfWDiedCPvPdGldarrVapnIksALeklGYrGcpV.sItAY
                      ++++VfWDie+C vP+G++a+ V+++I+++++k    G++   ++++
    KIAA0430   115    PPIGVFWDIENCSVPSGRSATAVVQRIREKFFK----GHREaEFICV 157  

                   GdlnkinPreilralsstGIsLDkhvPlagevtakdkyardkkmlvdill
                   +d +k n+ e++++l+++++++ +h++ a+   ak+  a+d+k+ +++ +
    KIAA0430   158 CDISKENK-EVIQELNNCQVTV-AHIN-AT---AKN--AADDKLRQSLRR 199  

                   WaldnppPanlmLISgDivdrdfasalhdlkrkrgYniLLAepekasekl
                   +a+++++Pa+++L+S+D   ++fa  l+dl++++g++i+L+++++ase+l
    KIAA0430   200 FANTHTAPATVVLVSTD---VNFALELSDLRHRHGFHIILVHKNQASEAL 246  

                   sssplllaeastqeWlWesL<-*
                   +++ ++l++       +e++   
    KIAA0430   247 LHHANELIR-------FEEF    259  

PF04396.4.ls: domain 1 of 1, from 115 to 259: score 170.2, E = 5e-48
                   *->aktsVfWDiedCPvPdGldarrVapnIksALeklGYrGcpV.sItAY
                      ++++VfWDie+C vP+G++a+ V+++I+++++k    G++   ++++
    KIAA0430   115    PPIGVFWDIENCSVPSGRSATAVVQRIREKFFK----GHREaEFICV 157  

                   GdlnkinPreilralsstGIsLDkhvPlagevtakdkyardkkmlvdill
                   +d +k n+ e++++l+++++++ +h++ a+   ak+  a+d+k+ +++ +
    KIAA0430   158 CDISKENK-EVIQELNNCQVTV-AHIN-AT---AKN--AADDKLRQSLRR 199  

                   WaldnppPanlmLISgDivdrdfasalhdlkrkrgYniLLAepekasekl
                   +a+++++Pa+++L+S+D   ++fa  l+dl++++g++i+L+++++ase+l
    KIAA0430   200 FANTHTAPATVVLVSTD---VNFALELSDLRHRHGFHIILVHKNQASEAL 246  

                   sssplllaeastqeWlWesL<-*
                   +++ ++l++       +e++   
    KIAA0430   247 LHHANELIR-------FEEF    259  

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