hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02405534/chunk_1/iprscan-20080502-02405534.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0426 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 329.0 7.8e-96 11 PF00096.16.fs Zinc finger, C2H2 type 316.5 4.3e-92 11 PF02023.7.ls SCAN domain 251.9 1.3e-72 1 PF02023.7.fs SCAN domain 249.9 4.9e-72 1 PF01096.9.fs Transcription factor S-II (TFIIS) 60.8 3.9e-18 11 PF01286.9.fs XPA protein N-terminal 32.3 1.9e-08 8 PF07754.2.fs Domain of unknown function (DUF1610) 33.8 4.7e-08 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.fs 1/1 49 144 .. 1 96 [] 249.9 4.9e-72 PF02023.7.ls 1/1 49 144 .. 1 96 [] 251.9 1.3e-72 PF00096.16.ls 1/11 283 305 .. 1 24 [] 35.0 2.4e-07 PF00096.16.fs 1/11 283 305 .. 1 24 [] 33.1 5.5e-07 PF00096.16.fs 2/11 311 333 .. 1 24 [] 27.9 1e-05 PF00096.16.ls 2/11 311 333 .. 1 24 [] 29.9 8.4e-06 PF00096.16.fs 3/11 339 361 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 3/11 339 361 .. 1 24 [] 37.0 6.1e-08 PF00096.16.ls 4/11 367 389 .. 1 24 [] 33.2 8.5e-07 PF00096.16.fs 4/11 367 389 .. 1 24 [] 31.2 1.6e-06 PF00096.16.fs 5/11 395 417 .. 1 24 [] 25.6 3.8e-05 PF00096.16.ls 5/11 395 417 .. 1 24 [] 27.6 4e-05 PF00096.16.fs 6/11 423 445 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 6/11 423 445 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 7/11 451 472 .. 1 24 [] 30.0 3.2e-06 PF00096.16.ls 7/11 451 472 .. 1 24 [] 31.9 2e-06 PF00096.16.fs 8/11 478 500 .. 1 24 [] 30.4 2.5e-06 PF00096.16.ls 8/11 478 500 .. 1 24 [] 32.4 1.5e-06 PF00096.16.fs 9/11 506 528 .. 1 24 [] 35.0 1.8e-07 PF00096.16.ls 9/11 506 528 .. 1 24 [] 37.0 6e-08 PF00096.16.fs 10/11 534 556 .. 1 24 [] 24.6 6.9e-05 PF00096.16.ls 10/11 534 556 .. 1 24 [] 26.6 8.3e-05 Alignments of top-scoring domains: PF02023.7.fs: domain 1 of 1, from 49 to 144: score 249.9, E = 4.9e-72 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL +s+E+fRq+FRqf+YqetsGPrEALsrLReLChqWLrPE+hTKEQIL KIAA0426 49 HSREVFRQYFRQFCYQETSGPREALSRLRELCHQWLRPETHTKEQIL 95 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+ElQawVqe+hPeSgEE+Vt+lEdLerelDepg+qV KIAA0426 96 ELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEDLERELDEPGEQV 144 -* KIAA0426 - - PF02023.7.ls: domain 1 of 1, from 49 to 144: score 251.9, E = 1.3e-72 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL +s+E+fRq+FRqf+YqetsGPrEALsrLReLChqWLrPE+hTKEQIL KIAA0426 49 HSREVFRQYFRQFCYQETSGPREALSRLRELCHQWLRPETHTKEQIL 95 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+ElQawVqe+hPeSgEE+Vt+lEdLerelDepg+qV KIAA0426 96 ELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEDLERELDEPGEQV 144 -* KIAA0426 - - PF00096.16.ls: domain 1 of 11, from 283 to 305: score 35.0, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs++s+L H+r+H KIAA0426 283 YGCD-DCGKAFSQHSHLIEHQRIH 305 PF00096.16.fs: domain 1 of 11, from 283 to 305: score 33.1, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs++s+L H+r+H KIAA0426 283 YGCD-DCGKAFSQHSHLIEHQRIH 305 PF00096.16.fs: domain 2 of 11, from 311 to 333: score 27.9, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L rH+ +H KIAA0426 311 YKCE-ECGKAFRGRTVLIRHKIIH 333 PF00096.16.ls: domain 2 of 11, from 311 to 333: score 29.9, E = 8.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + L rH+ +H KIAA0426 311 YKCE-ECGKAFRGRTVLIRHKIIH 333 PF00096.16.fs: domain 3 of 11, from 339 to 361: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+s L++H+r H KIAA0426 339 YKCN-ECGKAFGRWSALNQHQRLH 361 PF00096.16.ls: domain 3 of 11, from 339 to 361: score 37.0, E = 6.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F r+s L++H+r H KIAA0426 339 YKCN-ECGKAFGRWSALNQHQRLH 361 PF00096.16.ls: domain 4 of 11, from 367 to 389: score 33.2, E = 8.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs+k+ L +H+++H KIAA0426 367 YHCN-DCGKAFSQKAGLFHHIKIH 389 PF00096.16.fs: domain 4 of 11, from 367 to 389: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCgk+Fs+k+ L +H+++H KIAA0426 367 YHCN-DCGKAFSQKAGLFHHIKIH 389 PF00096.16.fs: domain 5 of 11, from 395 to 417: score 25.6, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksFsr+s L++H+ +H KIAA0426 395 YQCT-QCNKSFSRRSILTQHQGVH 417 PF00096.16.ls: domain 5 of 11, from 395 to 417: score 27.6, E = 4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksFsr+s L++H+ +H KIAA0426 395 YQCT-QCNKSFSRRSILTQHQGVH 417 PF00096.16.fs: domain 6 of 11, from 423 to 445: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s+L +H+ +H KIAA0426 423 YECN-ECGKAFVYNSSLVSHQEIH 445 PF00096.16.ls: domain 6 of 11, from 423 to 445: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s+L +H+ +H KIAA0426 423 YECN-ECGKAFVYNSSLVSHQEIH 445 PF00096.16.fs: domain 7 of 11, from 451 to 472: score 30.0, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s L +H+r+H KIAA0426 451 YQCK-ECGKSF-SQSGLIQHQRIH 472 PF00096.16.ls: domain 7 of 11, from 451 to 472: score 31.9, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksF ++s L +H+r+H KIAA0426 451 YQCK-ECGKSF-SQSGLIQHQRIH 472 PF00096.16.fs: domain 8 of 11, from 478 to 500: score 30.4, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++ +L+ H+r+H KIAA0426 478 YKCD-VCEKAFIQRTSLTEHQRIH 500 PF00096.16.ls: domain 8 of 11, from 478 to 500: score 32.4, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++ +L+ H+r+H KIAA0426 478 YKCD-VCEKAFIQRTSLTEHQRIH 500 PF00096.16.fs: domain 9 of 11, from 506 to 528: score 35.0, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L+ H+r+H KIAA0426 506 YKCD-KCGKAFTQRSVLTEHQRIH 528 PF00096.16.ls: domain 9 of 11, from 506 to 528: score 37.0, E = 6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s L+ H+r+H KIAA0426 506 YKCD-KCGKAFTQRSVLTEHQRIH 528 PF00096.16.fs: domain 10 of 11, from 534 to 556: score 24.6, E = 6.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg +F+ +L +H+r+H KIAA0426 534 YKCD-ECGNAFRGITSLIQHQRIH 556 PF00096.16.ls: domain 10 of 11, from 534 to 556: score 26.6, E = 8.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg +F+ +L +H+r+H KIAA0426 534 YKCD-ECGNAFRGITSLIQHQRIH 556 //