hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02391196/chunk_1/iprscan-20080502-02391196.nocrc
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Query sequence: KIAA0425
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF06467.5.ls MYM-type Zinc finger 336.4 4.6e-98 9
PF06467.5.fs MYM-type Zinc finger 329.5 5.4e-96 10
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF06467.5.fs 1/10 84 124 .. 1 43 [] 46.7 3e-12
PF06467.5.ls 1/9 84 124 .. 1 43 [] 48.7 1.8e-11
PF06467.5.ls 2/9 136 179 .. 1 43 [] 46.3 9.6e-11
PF06467.5.fs 2/10 136 179 .. 1 43 [] 44.3 1.5e-11
PF06467.5.ls 3/9 186 221 .. 1 43 [] 28.1 2.9e-05
PF06467.5.fs 3/10 186 221 .. 1 43 [] 26.3 1.5e-06
PF06467.5.ls 4/9 232 266 .. 1 43 [] 41.3 3e-09
PF06467.5.fs 4/10 232 266 .. 1 43 [] 39.5 3.1e-10
PF06467.5.ls 5/9 276 314 .. 1 43 [] 45.2 2.1e-10
PF06467.5.fs 5/10 276 314 .. 1 43 [] 43.3 2.7e-11
PF06467.5.ls 6/9 322 353 .. 1 43 [] 3.3 0.51
PF06467.5.ls 7/9 430 464 .. 1 43 [] 43.4 7.3e-10
PF06467.5.fs 8/10 430 464 .. 1 43 [] 41.6 8.3e-11
PF06467.5.fs 9/10 471 510 .. 1 43 [] 37.3 1.3e-09
PF06467.5.ls 8/9 471 510 .. 1 43 [] 39.2 1.3e-08
PF06467.5.fs 10/10 517 551 .. 1 43 [] 39.1 4.1e-10
PF06467.5.ls 9/9 517 551 .. 1 43 [] 40.9 4.1e-09
Alignments of top-scoring domains:
PF06467.5.fs: domain 1 of 10, from 84 to 124: score 46.7, E = 3e-12
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+lFCS+ Cl+ y + +++ ++ tk t Cs C+k+i+n++++
KIAA0425 84 QLFCSTLCLTGYTVPPARPPPPLTKKT--CSSCSKDILNPKDV 124
PF06467.5.ls: domain 1 of 9, from 84 to 124: score 48.7, E = 1.8e-11
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+lFCS+ Cl+ y + +++ ++ tk t Cs C+k+i+n++++
KIAA0425 84 QLFCSTLCLTGYTVPPARPPPPLTKKT--CSSCSKDILNPKDV 124
PF06467.5.ls: domain 2 of 9, from 136 to 179: score 46.3, E = 9.6e-11
*->klFCSesClskykrknnvkaglvtkrt.trCsyCkkeisnleel<-*
k+FCS+sCls+y+ k ++++++ t +++t+Cs+C+k + ++e+
KIAA0425 136 KDFCSQSCLSTYELKKKPIVTINTNSIsTKCSMCQKNAVIRHEV 179
PF06467.5.fs: domain 2 of 10, from 136 to 179: score 44.3, E = 1.5e-11
*->klFCSesClskykrknnvkaglvtkrt.trCsyCkkeisnleel<-*
k+FCS+sCls+y+ k ++++++ t +++t+Cs+C+k + ++e+
KIAA0425 136 KDFCSQSCLSTYELKKKPIVTINTNSIsTKCSMCQKNAVIRHEV 179
PF06467.5.ls: domain 3 of 9, from 186 to 221: score 28.1, E = 2.9e-05
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+ CS++C+sk+++ nn +++ C++C+ ++++++
KIAA0425 186 HKLCSDACFSKFRSANNLTMNC-------CENCGGYCYSGSGQ 221
PF06467.5.fs: domain 3 of 10, from 186 to 221: score 26.3, E = 1.5e-06
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+ CS++C+sk+++ nn +++ C++C+ ++++++
KIAA0425 186 HKLCSDACFSKFRSANNLTMNC-------CENCGGYCYSGSGQ 221
PF06467.5.ls: domain 4 of 9, from 232 to 266: score 41.3, E = 3e-09
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
k FCS+sC+++yk+k +++++ C+ Ck++ s+ e++
KIAA0425 232 KKFCSSSCITAYKQKSAKITP--------CALCKSLRSSAEMI 266
PF06467.5.fs: domain 4 of 10, from 232 to 266: score 39.5, E = 3.1e-10
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
k FCS+sC+++yk+k +++++ C+ Ck++ s+ e++
KIAA0425 232 KKFCSSSCITAYKQKSAKITP--------CALCKSLRSSAEMI 266
PF06467.5.ls: domain 5 of 9, from 276 to 314: score 45.2, E = 2.1e-10
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+lFCS +Cls+y++k +++ag++++ C Ck+ + ++++l
KIAA0425 276 ELFCSVNCLSAYRVKMVTSAGVQVQ----CNSCKTSAIPQYHL 314
PF06467.5.fs: domain 5 of 10, from 276 to 314: score 43.3, E = 2.7e-11
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+lFCS +Cls+y++k +++ag++++ C Ck+ + ++++l
KIAA0425 276 ELFCSVNCLSAYRVKMVTSAGVQVQ----CNSCKTSAIPQYHL 314
PF06467.5.ls: domain 6 of 9, from 322 to 353: score 3.3, E = 0.51
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
+ FCS sC +++ +n+++g + + +l+++
KIAA0425 322 RNFCSYSCVVAFQNLFNKPTGM-----------NSSVVPLSQG 353
PF06467.5.ls: domain 7 of 9, from 430 to 464: score 43.4, E = 7.3e-10
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
++FC ++C ++yk+ nnv+a+ C+yCk e+ ++e++
KIAA0425 430 FQFCGKNCSDEYKKINNVMAM--------CEYCKIEKIVKETV 464
PF06467.5.fs: domain 8 of 10, from 430 to 464: score 41.6, E = 8.3e-11
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
++FC ++C ++yk+ nnv+a+ C+yCk e+ ++e++
KIAA0425 430 FQFCGKNCSDEYKKINNVMAM--------CEYCKIEKIVKETV 464
PF06467.5.fs: domain 9 of 10, from 471 to 510: score 37.3, E = 1.3e-09
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
k FCSe+C yk+++++++g+++k+ CsyC ++ + l++
KIAA0425 471 KSFCSEGCKLLYKHDLAKRWGNHCKM---CSYCLQTSPKLVQN 510
PF06467.5.ls: domain 8 of 9, from 471 to 510: score 39.2, E = 1.3e-08
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
k FCSe+C yk+++++++g+++k+ CsyC ++ + l++
KIAA0425 471 KSFCSEGCKLLYKHDLAKRWGNHCKM---CSYCLQTSPKLVQN 510
PF06467.5.fs: domain 10 of 10, from 517 to 551: score 39.1, E = 4.1e-10
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
++FC+e C+sky + + ++a+ C+ Ck++++++e+l
KIAA0425 517 EEFCCEECMSKYTVLFYQMAK--------CDACKRQGKLSESL 551
PF06467.5.ls: domain 9 of 9, from 517 to 551: score 40.9, E = 4.1e-09
*->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-*
++FC+e C+sky + + ++a+ C+ Ck++++++e+l
KIAA0425 517 EEFCCEECMSKYTVLFYQMAK--------CDACKRQGKLSESL 551
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