hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02322694/chunk_1/iprscan-20080502-02322694.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0421
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 180.8    1.3e-49   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00146      1/1     478   809 ..     1   336 []   180.8  1.3e-49

Alignments of top-scoring domains:
SM00146: domain 1 of 1, from 478 to 809: score 180.8, E = 1.3e-49
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrl....dLhlrpY
                      + +fKg +DL+ D++++Q+l++++++ ++     ++++++ +h+r Y
    KIAA0421   478    PYLFKGLEDLHLDERIMQFLSIVNTMFATI----NRqetpRFHARHY 520  

                   kvlptgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldml.va
                   +v p+g +sGli++v  +++l  + k    ++  + +++  +  d  +++
    KIAA0421   521 SVTPLGTRSGLIQWVDGATPLFGLYK---RWQQREAALQAQKAQDSYqTP 567  

                   eie.k.aqy.ptitlakakkkalrykhatlle.......klkvfegatsa
                   +  +   +++ +  ++ +  +++    ++ ++++ + + +++v e+   a
    KIAA0421   568 QNPgIvPRPsELYYSKIGPALKTVGLSLDVSRrdwplhvMKAVLEELMEA 617  

                   fkppvLydwfkekfpdpneiyfeardnFtrScAgySvvtYiLGlGDRHnd
                   ++p+ L++ +++ +++p+ +++ +   ++rS+A++S+v+Yi GlGDRH+d
    KIAA0421   618 TPPNLLAKELWSSCTTPD-EWWRVTQSYARSTAVMSMVGYIIGLGDRHLD 666  

                   NImldrktGhlfHIDFGfilgngpklpgfklfgRErvPFrLTpemvdvmG
                   N ++d++tG+++HID++ ++++g++l ++     E+vPFr T+++ ++ G
    KIAA0421   667 NVLIDMTTGEVVHIDYNVCFEKGKSLRVP-----EKVPFRMTQNIETALG 711  

                   gGgkpsgvfglFrslCerayralRknsnllmnllelMlsdglmpewrsg.
                       ++gv+g Fr  Ce+++ ++R+ +++l++lle++++d+l  +w++g+
    KIAA0421   712 ----VTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPL-VDWTAGg 756  

                   .....ekdikylrerlrldvlsdeeaaeyfkktektkliessleslttrl
                   + +  +      +++ +   +s++e  + +++     l +s +++   ++
    KIAA0421   757 eagfaGAVYGGGGQQAESK-QSKREMEREITR----SLFSSRVAEI--KV 799  

                   ndlfhllaql<-*
                   n++ ++  +l   
    KIAA0421   800 NWFKNRDEML    809  

//