hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02185426/chunk_1/iprscan-20080502-02185426.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0413 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 410.0 1.4e-118 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/13 593 632 .. 1 46 [] 34.5 1.5e-05 SM00320 2/13 635 674 .. 1 46 [] 51.7 9.3e-11 SM00320 3/13 677 718 .. 1 46 [] 40.8 1.9e-07 SM00320 4/13 721 760 .. 1 46 [] 58.1 1.1e-12 SM00320 5/13 776 814 .. 1 46 [] 4.2 1.1e+02 SM00320 6/13 817 857 .. 1 46 [] 16.1 1.4 SM00320 7/13 860 899 .. 1 46 [] 42.5 5.5e-08 SM00320 8/13 941 978 .. 1 46 [] 5.5 66 SM00320 9/13 982 1020 .. 1 46 [] 27.1 0.0024 SM00320 10/13 1022 1060 .. 1 46 [] 26.8 0.0029 SM00320 11/13 1063 1102 .. 1 46 [] 33.7 2.5e-05 SM00320 12/13 1105 1144 .. 1 46 [] 40.7 2e-07 SM00320 13/13 1156 1192 .. 1 46 [] 28.3 0.0011 Alignments of top-scoring domains: SM00320: domain 1 of 13, from 593 to 632: score 34.5, E = 1.5e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+ + + Ht+ +V++ +fs dg +++as++ D+t+ ++ KIAA0413 593 TnLSRLVVRPHTD--AVYHACFSEDG------QRIASCGaDKTLQVF 631 d<-* + KIAA0413 632 K 632 SM00320: domain 2 of 13, from 635 to 674: score 51.7, E = 9.3e-11 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ l ++k+H++ +V+++afs d+ +++a++s D+++++W KIAA0413 635 TgEKLLEIKAHED--EVLCCAFSTDD------RFIATCSvDKKVKIW 673 d<-* + KIAA0413 674 N 674 SM00320: domain 3 of 13, from 677 to 718: score 40.8, E = 1.9e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++l++t++ H+ V+++ f ++ + lla+gs+D+ ++lW KIAA0413 677 TgELVHTYDEHSE--QVNCCHFTNSSHH----LLLATGSsDCFLKLW 717 d<-* d KIAA0413 718 D 718 SM00320: domain 4 of 13, from 721 to 760: score 58.1, E = 1.1e-12 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++ t+ gHt+ +V++++fspd+ +llas+s Dgt++lW KIAA0413 721 QkECRNTMFGHTN--SVNHCRFSPDD------KLLASCSaDGTLKLW 759 d<-* d KIAA0413 760 D 760 SM00320: domain 5 of 13, from 776 to 814: score 4.2, E = 1.1e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +l + + V ++++s dg ++ ++ +++ i l+ KIAA0413 776 FlNLEDPQEDMEV--IVKCCSWSADG------ARIMVAAkNK-IFLF 813 d<-* d KIAA0413 814 D 814 SM00320: domain 6 of 13, from 817 to 857: score 16.1, E = 1.4 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl t+ ll ++++gH + + ++fsp + +l +++ + ++ l KIAA0413 817 TsGLLGEIHtGHHS--TIQYCDFSPQN------HLAVVALsQYCVEL 855 Wd<-* W+ KIAA0413 856 WN 857 SM00320: domain 7 of 13, from 860 to 899: score 42.5, E = 5.5e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ ++ ++gH + +V++v fspdg + ++++s+D tirlW KIAA0413 860 SrSKVADCRGHLS--WVHGVMFSPDG------SSFLTSSdDQTIRLW 898 d<-* + KIAA0413 899 E 899 SM00320: domain 8 of 13, from 941 to 978: score 5.5, E = 66 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + ++ l+ ++ V++++ sp+ +++a g+++g i + KIAA0413 941 RtGQIDYLT--EA--QVSCCCLSPHL------QYIAFGDeNGAIEIL 977 d<-* + KIAA0413 978 E 978 SM00320: domain 9 of 13, from 982 to 1020: score 27.1, E = 0.0024 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ + ++ H++ V++++f d + l+s+s+D i +W KIAA0413 982 NrIFQSRFQ-HKK--TVWHIQFTADE------KTLISSSdDAEIQVW 1019 d<-* + KIAA0413 1020 N 1020 SM00320: domain 10 of 13, from 1022 to 1060: score 26.8, E = 0.0029 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + l+gH+ V + + + ++l+s s Dgt+++W KIAA0413 1022 QlDKCIFLRGHQE--TVKDFRLLKN-------SRLLSWSfDGTVKVW 1059 d<-* + KIAA0413 1060 N 1060 SM00320: domain 11 of 13, from 1063 to 1102: score 33.7, E = 2.5e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ + + +H+g V+s+++s+d + + s s D+t ++W KIAA0413 1063 TgNKEKDFVCHQG--TVLSCDISHDA------TKFSSTSaDKTAKIW 1101 d<-* + KIAA0413 1102 S 1102 SM00320: domain 12 of 13, from 1105 to 1144: score 40.7, E = 2e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +l++l+gH+g V++ afs d+ +lla+g+++g ir+W KIAA0413 1105 LlLPLHELRGHNG--CVRCSAFSVDS------TLLATGDdNGEIRIW 1143 d<-* + KIAA0413 1144 N 1144 SM00320: domain 13 of 13, from 1156 to 1192: score 28.3, E = 0.0011 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd + + + H g +Vt+++fspdg ++l+s++ g i+ W+ KIAA0413 1156 PlSEEGAAT-HGG--WVTDLCFSPDG------KMLISAG-GYIKWWN 1192 <-* KIAA0413 - - //