hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02185426/chunk_1/iprscan-20080502-02185426.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0413 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00931.13.ls NB-ARC domain 455.5 6.2e-134 1 PF00931.13.fs NB-ARC domain 453.7 2.2e-133 1 PF00400.22.ls WD domain, G-beta repeat 366.6 3.5e-107 13 PF00400.22.fs WD domain, G-beta repeat 347.1 2.7e-101 13 PF00619.12.ls Caspase recruitment domain 96.0 1.1e-25 1 PF00619.12.fs Caspase recruitment domain 94.0 2e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00619.12.ls 1/1 6 90 .. 1 89 [] 96.0 1.1e-25 PF00619.12.fs 1/1 6 90 .. 1 89 [] 94.0 2e-25 PF00931.13.ls 1/1 98 403 .. 1 371 [] 455.5 6.2e-134 PF00931.13.fs 1/1 98 403 .. 1 371 [] 453.7 2.2e-133 PF00400.22.ls 1/13 594 632 .. 1 38 [] 30.0 7.9e-06 PF00400.22.fs 1/13 594 632 .. 1 38 [] 28.0 6.4e-07 PF00400.22.ls 2/13 636 674 .. 1 38 [] 48.4 2.3e-11 PF00400.22.fs 2/13 636 674 .. 1 38 [] 46.4 4.2e-12 PF00400.22.fs 3/13 678 718 .. 1 38 [] 36.4 2.7e-09 PF00400.22.ls 3/13 678 718 .. 1 38 [] 38.4 2.2e-08 PF00400.22.fs 4/13 722 760 .. 1 38 [] 55.8 9.4e-15 PF00400.22.ls 4/13 722 760 .. 1 38 [] 57.8 3.4e-14 PF00400.22.ls 7/13 861 899 .. 1 38 [] 37.8 3.5e-08 PF00400.22.fs 7/13 861 899 .. 1 38 [] 35.8 4.1e-09 PF00400.22.ls 9/13 982 1020 .. 1 38 [] 21.9 0.0021 PF00400.22.fs 9/13 982 1020 .. 1 38 [] 20.0 0.00012 PF00400.22.ls 10/13 1023 1060 .. 1 38 [] 22.2 0.0018 PF00400.22.fs 10/13 1023 1060 .. 1 38 [] 20.2 0.0001 PF00400.22.ls 11/13 1064 1102 .. 1 38 [] 34.4 3.7e-07 PF00400.22.fs 11/13 1064 1102 .. 1 38 [] 32.4 3.7e-08 PF00400.22.fs 12/13 1106 1144 .. 1 38 [] 35.2 6.1e-09 PF00400.22.ls 12/13 1106 1144 .. 1 38 [] 37.1 5.5e-08 PF00400.22.fs 13/13 1165 1192 .. 8 38 .] 16.5 0.0011 Alignments of top-scoring domains: PF00619.12.ls: domain 1 of 1, from 6 to 90: score 96.0, E = 1.1e-25 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt r++l ++R+aL ++++ ++++D++++ + Lt e+E++++ ++t KIAA0413 6 RNCLLQHREALEKDIK---TSYIMDHMISDGFLTISEEEKVRN-EPT 48 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* +++a +L+++++kk++ + F++aL ++g+++La ll+++ KIAA0413 49 QQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDG 90 PF00619.12.fs: domain 1 of 1, from 6 to 90: score 94.0, E = 2e-25 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt r++l ++R+aL ++++ ++++D++++ + Lt e+E++++ ++t KIAA0413 6 RNCLLQHREALEKDIK---TSYIMDHMISDGFLTISEEEKVRN-EPT 48 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* +++a +L+++++kk++ + F++aL ++g+++La ll+++ KIAA0413 49 QQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDG 90 PF00931.13.ls: domain 1 of 1, from 98 to 403: score 455.5, E = 6.2e-134 *->dvktvlssevevidtsevFVGredmieaviekLlemsadenlgvvgi +v+tvl++ ++v+++++vFV+r++ ++a+++kL++ + +++g+v+i KIAA0413 98 SVRTVLCE-GGVPQRPVVFVTRKKLVNAIQQKLSKLK--GEPGWVTI 141 vGMGGvGKTTLAkqiynddslvgghFPDvvaWvvVSktyteKDsvfrlqk +GM+G+GK++LA+++++d+sl++g+FP++v+Wv+V+k++++ + l+k KIAA0413 142 HGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS----GLLMK 187 dqlilqeLglddeswddshsiTDFiNRVLSRSEDDLLnfpSserveknes q+++++L++d es+ s+r ++n++ KIAA0413 188 LQNLCTRLDQD-ESF--------------------------SQRLPLNIE 210 evlarklkelLlrKHPRfLlVLDDVWekeldWdkigvpfpdgengsrvil e ++++l++l+lrKHPR+Ll+LDDVW+++ ++ ++++++++++l KIAA0413 211 E-AKDRLRILMLRKHPRSLLILDDVWDSW-VL-------KAFDSQCQILL 251 TTRsesVagrmgakeskpheve.lLekeesWeLFsnkGmPmPVfekedpl TTR++sV+++++++ +++++ve++L+ke+++e++s + V++k+ KIAA0413 252 TTRDKSVTDSVMGP-KYVVPVEsSLGKEKGLEILSLF-----VNMKK--- 292 sehpelEevakeivekCkGLPLalkvlGglLasKsktvYeeWekvleqln ++l+e+a++i+++CkG+PL+++++G+lL ++ ++ ++We++l+ql+ KIAA0413 293 ---ADLPEQAHSIIKECKGSPLVVSLIGALL--RD-FP-NRWEYYLKQLQ 335 nelae.srgsssnlnevls.iLklSYdnLpsdhLKrCFlylaDEDRSALl n++++++r+sss+++e+l++++++S+++L++ ++K+++++l+ + KIAA0413 336 NKQFKrIRKSSSYDYEALDeAMSISVEMLRE-DIKDYYTDLS-------I 377 FpedyeirkeqlvklWiaEgfveasdi<-* +++d+++++++l++lW++E++ e++di KIAA0413 378 LQKDVKVPTKVLCILWDMETE-EVEDI 403 PF00931.13.fs: domain 1 of 1, from 98 to 403: score 453.7, E = 2.2e-133 *->dvktvlssevevidtsevFVGredmieaviekLlemsadenlgvvgi +v+tvl++ ++v+++++vFV+r++ ++a+++kL++ + +++g+v+i KIAA0413 98 SVRTVLCE-GGVPQRPVVFVTRKKLVNAIQQKLSKLK--GEPGWVTI 141 vGMGGvGKTTLAkqiynddslvgghFPDvvaWvvVSktyteKDsvfrlqk +GM+G+GK++LA+++++d+sl++g+FP++v+Wv+V+k++++ + l+k KIAA0413 142 HGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS----GLLMK 187 dqlilqeLglddeswddshsiTDFiNRVLSRSEDDLLnfpSserveknes q+++++L++d es+ s+r ++n++ KIAA0413 188 LQNLCTRLDQD-ESF--------------------------SQRLPLNIE 210 evlarklkelLlrKHPRfLlVLDDVWekeldWdkigvpfpdgengsrvil e ++++l++l+lrKHPR+Ll+LDDVW+++ ++ ++++++++++l KIAA0413 211 E-AKDRLRILMLRKHPRSLLILDDVWDSW-VL-------KAFDSQCQILL 251 TTRsesVagrmgakeskpheve.lLekeesWeLFsnkGmPmPVfekedpl TTR++sV+++++++ +++++ve++L+ke+++e++s + V++k+ KIAA0413 252 TTRDKSVTDSVMGP-KYVVPVEsSLGKEKGLEILSLF-----VNMKK--- 292 sehpelEevakeivekCkGLPLalkvlGglLasKsktvYeeWekvleqln ++l+e+a++i+++CkG+PL+++++G+lL ++ ++ ++We++l+ql+ KIAA0413 293 ---ADLPEQAHSIIKECKGSPLVVSLIGALL--RD-FP-NRWEYYLKQLQ 335 nelae.srgsssnlnevls.iLklSYdnLpsdhLKrCFlylaDEDRSALl n++++++r+sss+++e+l++++++S+++L++ ++K+++++l+ + KIAA0413 336 NKQFKrIRKSSSYDYEALDeAMSISVEMLRE-DIKDYYTDLS-------I 377 FpedyeirkeqlvklWiaEgfveasdi<-* +++d+++++++l++lW++E++ e++di KIAA0413 378 LQKDVKVPTKVLCILWDMETE-EVEDI 403 PF00400.22.ls: domain 1 of 13, from 594 to 632: score 30.0, E = 7.9e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* v + Ht++V+ +fs d g+++as+++D+t+ +++ KIAA0413 594 NLSRlVVrPHTDAVYHACFSED-GQRIASCGADKTLQVFK 632 PF00400.22.fs: domain 1 of 13, from 594 to 632: score 28.0, E = 6.4e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* v + Ht++V+ +fs d g+++as+++D+t+ +++ KIAA0413 594 NLSRlVVrPHTDAVYHACFSED-GQRIASCGADKTLQVFK 632 PF00400.22.ls: domain 2 of 13, from 636 to 674: score 48.4, E = 2.3e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge + ++++H++ V c+afs d +++a++S D+++kiW+ KIAA0413 636 GEKLlEIkAHEDEVLCCAFSTD-DRFIATCSVDKKVKIWN 674 PF00400.22.fs: domain 2 of 13, from 636 to 674: score 46.4, E = 4.2e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ge + ++++H++ V c+afs d +++a++S D+++kiW+ KIAA0413 636 GEKLlEIkAHEDEVLCCAFSTD-DRFIATCSVDKKVKIWN 674 PF00400.22.fs: domain 3 of 13, from 678 to 718: score 36.4, E = 2.7e-09 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* ge++++++ H+ V+c+ f +++ lla+gS+D+ +k+Wd KIAA0413 678 GELVhTYdEHSEQVNCCHFTNSsHHLLLATGSSDCFLKLWD 718 PF00400.22.ls: domain 3 of 13, from 678 to 718: score 38.4, E = 2.2e-08 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* ge++++++ H+ V+c+ f +++ lla+gS+D+ +k+Wd KIAA0413 678 GELVhTYdEHSEQVNCCHFTNSsHHLLLATGSSDCFLKLWD 718 PF00400.22.fs: domain 4 of 13, from 722 to 760: score 55.8, E = 9.4e-15 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +ec ++ gHt++V+ ++fspd +llas+S+Dgt+k+Wd KIAA0413 722 KECRnTMfGHTNSVNHCRFSPD-DKLLASCSADGTLKLWD 760 PF00400.22.ls: domain 4 of 13, from 722 to 760: score 57.8, E = 3.4e-14 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +ec ++ gHt++V+ ++fspd +llas+S+Dgt+k+Wd KIAA0413 722 KECRnTMfGHTNSVNHCRFSPD-DKLLASCSADGTLKLWD 760 PF00400.22.ls: domain 7 of 13, from 861 to 899: score 37.8, E = 3.5e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + +gH s+V v fspd g+ ++++S+D ti++W+ KIAA0413 861 RSKVaDCrGHLSWVHGVMFSPD-GSSFLTSSDDQTIRLWE 899 PF00400.22.fs: domain 7 of 13, from 861 to 899: score 35.8, E = 4.1e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + +gH s+V v fspd g+ ++++S+D ti++W+ KIAA0413 861 RSKVaDCrGHLSWVHGVMFSPD-GSSFLTSSDDQTIRLWE 899 PF00400.22.ls: domain 9 of 13, from 982 to 1020: score 21.9, E = 0.0021 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ H++tV+ + f d ++l+s+S+D i +W+ KIAA0413 982 NRIFqSRfQHKKTVWHIQFTAD-EKTLISSSDDAEIQVWN 1020 PF00400.22.fs: domain 9 of 13, from 982 to 1020: score 20.0, E = 0.00012 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ H++tV+ + f d ++l+s+S+D i +W+ KIAA0413 982 NRIFqSRfQHKKTVWHIQFTAD-EKTLISSSDDAEIQVWN 1020 PF00400.22.ls: domain 10 of 13, from 1023 to 1060: score 22.2, E = 0.0018 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + l+gH+ tV + + + ++l+s S Dgt+k+W+ KIAA0413 1023 LDKCiFLrGHQETVKDFRLLKN--SRLLSWSFDGTVKVWN 1060 PF00400.22.fs: domain 10 of 13, from 1023 to 1060: score 20.2, E = 0.0001 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + l+gH+ tV + + + ++l+s S Dgt+k+W+ KIAA0413 1023 LDKCiFLrGHQETVKDFRLLKN--SRLLSWSFDGTVKVWN 1060 PF00400.22.ls: domain 11 of 13, from 1064 to 1102: score 34.4, E = 3.7e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + + H++tV ++++s+d + + s S+D+t kiW+ KIAA0413 1064 GNKEkDFvCHQGTVLSCDISHD-ATKFSSTSADKTAKIWS 1102 PF00400.22.fs: domain 11 of 13, from 1064 to 1102: score 32.4, E = 3.7e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + + H++tV ++++s+d + + s S+D+t kiW+ KIAA0413 1064 GNKEkDFvCHQGTVLSCDISHD-ATKFSSTSADKTAKIWS 1102 PF00400.22.fs: domain 12 of 13, from 1106 to 1144: score 35.2, E = 6.1e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++l+gH++ V+c afs d ++lla+g ++g i+iW+ KIAA0413 1106 LLPLhELrGHNGCVRCSAFSVD-STLLATGDDNGEIRIWN 1144 PF00400.22.ls: domain 12 of 13, from 1106 to 1144: score 37.1, E = 5.5e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++l+gH++ V+c afs d ++lla+g ++g i+iW+ KIAA0413 1106 LLPLhELrGHNGCVRCSAFSVD-STLLATGDDNGEIRIWN 1144 PF00400.22.fs: domain 13 of 13, from 1165 to 1192: score 16.5, E = 0.0011 *->HtstVtcvafspdsgpllasgSrDgtikiWd<-* H ++Vt+++fspd g++l+s++ ik W+ KIAA0413 1165 HGGWVTDLCFSPD-GKMLISAGG--YIKWWN 1192 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