# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01159.fasta.huge -Q ../query/KIAA0403.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0403, 416 aa vs ./tmplib.23147 library 1987089 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.6529+/-0.0076; mu= -3.5150+/- 0.516 mean_var=243.3435+/-58.134, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.082218 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0902 ( 910 res) hk09777 ( 910) 605 84.5 2.7e-17 KIAA1686 ( 1175 res) fh25862s1 (1175) 230 40.2 0.0008 KIAA0969 ( 1091 res) hj06525 (1091) 223 39.3 0.0014 >>KIAA0902 ( 910 res) hk09777 (910 aa) initn: 529 init1: 529 opt: 605 Z-score: 402.3 bits: 84.5 E(): 2.7e-17 Smith-Waterman score: 605; 38.148% identity (65.926% similar) in 270 aa overlap (9-267:576-834) 10 20 30 KIAA04 KTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLS :.:::::::::..::.:::.:::. :..: KIAA09 VPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFS 550 560 570 580 590 600 40 50 60 70 80 90 KIAA04 NKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTVERASECKKKHAFKISHPQIKTFY .::::.: .:: .::::: :. :::.::..::.: ..:::::.::.::: ::.::.:: KIAA09 QKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFY 610 620 630 640 650 660 100 110 120 130 140 150 KIAA04 FAAENVQEMNVWLNK---LGSAVIHQESTTKDEECYSESEQEDPEIAA----ETPPPPHA ::::....:: :::. : .. ..: .... .:::..:. . . ..::::. KIAA09 FAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYD 670 680 690 700 710 720 160 170 180 190 200 210 KIAA04 SQTQSLTAQQASSSSPSLSGTSYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAE . . . : .:: . . .:: :. :. :: . :: . . . KIAA09 TYPRP---PSMSCASPYVEAKHSRLSSTET-----SQSQSSHEEFRQEVTGSSAVSPIRK 730 740 750 760 770 220 230 240 250 260 KIAA04 DEGQPITFAVQVHSPVPSEAGIHK----ALENSFVTSESGFLNSLSSDDTSSLSSNHDHL .: .. ...:. : .:.: ::.: : :.:. . : :.: ... :: KIAA09 TASQRRSWQDLIETPLTS-SGLHYLQTLPLEDS-VFSDSAAI-SPEHRRQSTLPTQKCHL 780 790 800 810 820 830 270 280 290 300 310 320 KIAA04 TVPDKPAGSKIMDKEETKVSEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCK KIAA09 QDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLMLQLVPVTHRMTCNPQRWR 840 850 860 870 880 890 >>KIAA1686 ( 1175 res) fh25862s1 (1175 aa) initn: 173 init1: 122 opt: 230 Z-score: 160.5 bits: 40.2 E(): 0.0008 Smith-Waterman score: 235; 26.047% identity (57.674% similar) in 215 aa overlap (24-220:174-385) 10 20 30 40 50 KIAA04 KTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSL .:::::. : : ::: : .:. : KIAA16 GRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKL---WKKRWFVLSDLCL 150 160 170 180 190 200 60 70 80 90 100 110 KIAA04 YWYSNQMAEKADGFVNLPDFTVER-ASE--CKKKHAFKISHPQIKTFYFAAENVQEMNVW ..: .. : : . ::.: . .:: ..:.::: .::...:.:: ... .::..: KIAA16 FYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELW 210 220 230 240 250 260 120 130 140 150 160 KIAA04 LNK-LGSAVIHQESTTKDEECYSESE--QEDPEIAAETP-PPPHASQTQSLTAQQASSSS .. : .:... : . . .. ::. .: .: . :. ...:. .. . KIAA16 MKAMLDAALVQTEPVKRVDKITSENAPTKETNNIPNHRVLIKPEIQNNQKNKEMSKIEEK 270 280 290 300 310 320 170 180 190 200 210 KIAA04 PSLSGTSYSFS--------SLENTVKT---PSSFPSSLSKERQSLPDTVNSLSAAEDEGQ .: . .:.:. . :.:: :: . :. . :.. .::..:.. KIAA16 KALEAEKYGFQKDGQDRPLTKINSVKLNSLPSEYESGSACPAQTVHYRPINLSSSENKIV 330 340 350 360 370 380 220 230 240 250 260 270 KIAA04 PITFAVQVHSPVPSEAGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLTVPDKPAG ...: KIAA16 NVSLADLRGGNRPNTGPLYTEADRVIQRTNSMQQLEQWIKIQKGRGHEEETRGVISYQTL 390 400 410 420 430 440 >>KIAA0969 ( 1091 res) hj06525 (1091 aa) initn: 185 init1: 129 opt: 223 Z-score: 156.4 bits: 39.3 E(): 0.0014 Smith-Waterman score: 223; 27.068% identity (63.158% similar) in 133 aa overlap (25-153:107-235) 10 20 30 40 50 KIAA04 KTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLY :::.:. .: ..:.: : .: :. KIAA09 RATRTARKAIAFGKRSHSMKRNPNAPVTKAGWLFKQASSGV---KQWNKRWFVLVDRCLF 80 90 100 110 120 130 60 70 80 90 100 110 KIAA04 WYSNQMAEKADGFVNLPDF---TVERASECKKKHAFKISHPQIKTFYFAAENVQEMNVWL .:... :. : . : .: .:. ... ..::.:: : ..:..:.::. .:...:. KIAA09 YYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWI 140 150 160 170 180 190 120 130 140 150 160 170 KIAA04 NKLGSAV-IHQESTTKDEECYSESEQEDPEIAAETPPPPHASQTQSLTAQQASSSSPSLS . .: :. .. . :. . .: :. . ..:: : .: KIAA09 QAMGEAARVQIPPAQKSVPQAVRHSHEKPD-SENVPPSKHHQQPPHNSLPKPEPEAKTRG 200 210 220 230 240 250 180 190 200 210 220 230 KIAA04 GTSYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVHSPVPSE KIAA09 EGDGRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEPGSPYPEGPRVPGGGEQPAQP 260 270 280 290 300 310 416 residues in 1 query sequences 1987089 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:11 2008 done: Thu Dec 18 15:20:12 2008 Total Scan time: 0.410 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]