# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01095.fasta.huge -Q ../query/KIAA0401.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0401, 344 aa
 vs ./tmplib.23147 library

1987161 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.2332+/-0.00744; mu= 3.0855+/- 0.504
 mean_var=220.3925+/-53.941, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.086392

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1546  ( 684 res)   fh12289                     ( 684)  295 49.2 7.5e-07


>>KIAA1546  ( 684 res)   fh12289                          (684 aa)
 initn: 281 init1: 149 opt: 295  Z-score: 214.8  bits: 49.2 E(): 7.5e-07
Smith-Waterman score: 295;  44.961% identity (64.341% similar) in 129 aa overlap (221-344:568-684)

              200       210       220       230       240       250
KIAA04 AGPSLTEKPWALGAGDFNSALKGSPGFQDKLWNPMKGEEGRIPAAGASQLVFYQHKNLNQ
                                     : :: ...  ::      .:::::::..:.
KIAA15 DPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRI------SLVFYQHKSMNE
       540       550       560       570             580       590 

              260       270       280       290       300       310
KIAA04 PNHGLALWEAKMKQLAERARARQEEAARLGLGQQEAKLYGKKRKWGGTVVAEPQQKEKKG
       :.::::::::::   ::.:: ..::  . :      : .::: :      :::..  .  
KIAA15 PKHGLALWEAKM---AEKAREKEEECEKYGPDYVPQKSHGKKVK---REPAEPHETSEPT
             600          610       620       630          640     

                   320       330       340    
KIAA04 VVPTRQALA-----VPTDSAVTVSSYAYTKVTGPYSRWI
        .   ..::     : :::.::.: ::.:.:::::.:.:
KIAA15 YLRFIKSLAERTMSVTTDSTVTTSPYAFTRVTGPYNRYI
         650       660       670       680    




344 residues in 1 query   sequences
1987161 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:20:04 2008 done: Thu Dec 18 15:20:05 2008
 Total Scan time:  0.360 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]