hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01554742/chunk_1/iprscan-20080502-01554742.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0400 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.fs Putative GTPase activating protein for Arf 112.2 5.8e-32 1 PF01412.9.ls Putative GTPase activating protein for Arf 114.1 3.6e-31 1 PF00169.19.fs PH domain 66.7 7.8e-20 2 PF00169.19.ls PH domain 68.6 1.9e-17 1 PF00018.18.fs SH3 domain 47.4 3.4e-12 1 PF00018.18.ls SH3 domain 49.4 1.1e-11 1 PF00023.20.fs Ankyrin repeat 42.2 8.8e-11 3 PF00023.20.ls Ankyrin repeat 45.9 1.3e-10 2 PF07653.7.fs Variant SH3 domain 30.7 3.5e-08 1 PF07653.7.ls Variant SH3 domain 32.5 1.4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/2 322 413 .. 1 92 [] 66.6 8.1e-20 PF00169.19.ls 1/1 322 413 .. 1 92 [] 68.6 1.9e-17 PF01412.9.fs 1/1 437 559 .. 1 137 [] 112.2 5.8e-32 PF01412.9.ls 1/1 437 559 .. 1 137 [] 114.1 3.6e-31 PF00023.20.ls 1/2 600 635 .. 1 33 [] 16.7 0.079 PF00023.20.fs 1/3 600 635 .. 1 33 [] 14.7 0.0041 PF00023.20.ls 2/2 636 668 .. 1 33 [] 29.2 1.4e-05 PF00023.20.fs 2/3 636 668 .. 1 33 [] 27.2 1.3e-06 PF00023.20.fs 3/3 669 689 .. 1 21 [. 0.3 42 PF00018.18.ls 1/1 963 1020 .. 1 59 [] 49.4 1.1e-11 PF00018.18.fs 1/1 963 1017 .. 1 56 [. 47.4 3.4e-12 PF07653.7.ls 1/1 964 1020 .. 1 69 [] 32.5 1.4e-06 PF07653.7.fs 1/1 964 1020 .. 1 69 [] 30.7 3.5e-08 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 2, from 322 to 413: score 66.6, E = 8.1e-20 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs ++ G L+kk+++ +k w+kR + ++++ L++ +p +++L KIAA0400 322 TERNGSLYKKSdgIRKVWQKRKCSVKNGFLTISHGTANRPPAKLNLL 368 giqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<- ++qv++ p+ +k cF ++++dr t+++qae+e+e++ W++ +q++ KIAA0400 369 TCQVKTNPE--EKKCFDLIShDR-TYHFQAEDEQECQIWMSVLQNSKE 413 * KIAA0400 - - PF00169.19.ls: domain 1 of 1, from 322 to 413: score 68.6, E = 1.9e-17 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkkkkpkgsipLs ++ G L+kk+++ +k w+kR + ++++ L++ +p +++L KIAA0400 322 TERNGSLYKKSdgIRKVWQKRKCSVKNGFLTISHGTANRPPAKLNLL 368 giqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<- ++qv++ p+ +k cF ++++dr t+++qae+e+e++ W++ +q++ KIAA0400 369 TCQVKTNPE--EKKCFDLIShDR-TYHFQAEDEQECQIWMSVLQNSKE 413 * KIAA0400 - - PF01412.9.fs: domain 1 of 1, from 437 to 559: score 112.2, E = 5.8e-32 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn ++ + ++++ gN +C+DCga p+PtW S nlG++ CieCSGiHR KIAA0400 437 KEIISEVQRMT-GNDVCCDCGA-PDPTWLSTNLGILTCIECSGIHRE 481 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH S+ SltLD el++ + ++GN+++n++ E l+++ + KIAA0400 482 L-GVHYSRM--QSLTLDVLGTSELLLAK--NIGNAGFNEIMECCLPAEDS 526 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++++ +d ++ +i aKY e+++ k + KIAA0400 527 VKPNPG-------SDMNARKDYITAKYIERRYARKKHADN 559 PF01412.9.ls: domain 1 of 1, from 437 to 559: score 114.1, E = 3.6e-31 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn ++ + ++++ gN +C+DCga p+PtW S nlG++ CieCSGiHR KIAA0400 437 KEIISEVQRMT-GNDVCCDCGA-PDPTWLSTNLGILTCIECSGIHRE 481 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH S+ SltLD el++ + ++GN+++n++ E l+++ + KIAA0400 482 L-GVHYSRM--QSLTLDVLGTSELLLAK--NIGNAGFNEIMECCLPAEDS 526 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++++ +d ++ +i aKY e+++ k + KIAA0400 527 VKPNPG-------SDMNARKDYITAKYIERRYARKKHADN 559 PF00023.20.ls: domain 1 of 2, from 600 to 635: score 16.7, E = 0.079 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* +T+LHlA+++ + +l +v +L+++ +l+ q+ KIAA0400 600 PDETALHLAVRSVdrtSLHIVDFLVQNSGNLDKQTG 635 PF00023.20.fs: domain 1 of 3, from 600 to 635: score 14.7, E = 0.0041 *->dGfTPLHlAalrg...nlevvklLlsqGAdlnaqdd<-* +T+LHlA+++ + +l +v +L+++ +l+ q+ KIAA0400 600 PDETALHLAVRSVdrtSLHIVDFLVQNSGNLDKQTG 635 PF00023.20.ls: domain 2 of 2, from 636 to 668: score 29.2, E = 1.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+LH+ +l +n+e++klLl A++ + + KIAA0400 636 KGSTALHYCCLTDNAECLKLLLRGKASIEIANE 668 PF00023.20.fs: domain 2 of 3, from 636 to 668: score 27.2, E = 1.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+LH+ +l +n+e++klLl A++ + + KIAA0400 636 KGSTALHYCCLTDNAECLKLLLRGKASIEIANE 668 PF00023.20.fs: domain 3 of 3, from 669 to 689: score 0.3, E = 42 *->dGfTPLHlAalrgnlevvklL<-* G+TPL +A + ++ + +lL KIAA0400 669 SGETPLDIAKRLKHEHCEELL 689 PF00018.18.ls: domain 1 of 1, from 963 to 1020: score 49.4, E = 1.1e-11 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk k+v+ALY +a ++dEL+F +GDvi+v ++d +WW g +g+ G+ KIAA0400 963 KRVKALYNCVADNPDELTFSEGDVIIVDGEEDQ-EWWIGHIDGDPGR 1008 eGliPsNYVepv<-* +G +P+++V + KIAA0400 1009 KGAFPVSFVHFI 1020 PF00018.18.fs: domain 1 of 1, from 963 to 1017: score 47.4, E = 3.4e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk k+v+ALY +a ++dEL+F +GDvi+v ++d +WW g +g+ G+ KIAA0400 963 KRVKALYNCVADNPDELTFSEGDVIIVDGEEDQ-EWWIGHIDGDPGR 1008 eGliPsNYV<-* +G +P+++V KIAA0400 1009 KGAFPVSFV 1017 PF07653.7.ls: domain 1 of 1, from 964 to 1020: score 32.5, E = 1.4e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ ++va +++e L++ +Gdv+ V +++d +ww KIAA0400 964 RVKALYNCVA-DNPDE------LTFSEGDVIIVD----GEEDQEWWI 999 geslgg..GrrrRGlvPssaveel<-* g +g++Gr+ G +P s+v + KIAA0400 1000 GHI-DGdpGRK--GAFPVSFVHFI 1020 PF07653.7.fs: domain 1 of 1, from 964 to 1020: score 30.7, E = 3.5e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ ++va +++e L++ +Gdv+ V +++d +ww KIAA0400 964 RVKALYNCVA-DNPDE------LTFSEGDVIIVD----GEEDQEWWI 999 geslgg..GrrrRGlvPssaveel<-* g +g++Gr+ G +P s+v + KIAA0400 1000 GHI-DGdpGRK--GAFPVSFVHFI 1020 //