hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01514104/chunk_1/iprscan-20080502-01514104.nocrc
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Query sequence: KIAA0398
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03291.7.fs mRNA capping enzyme                            631.2   8.2e-187   2
PF03291.7.ls mRNA capping enzyme                            625.4   4.4e-185   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03291.7.fs   1/2     136   171 ..     1    61 [.    32.9  7.6e-10
PF03291.7.ls   1/1     136   476 .]     1   563 []   625.4 4.4e-185
PF03291.7.fs   2/2     172   476 .]   233   563 .]   598.3 6.5e-177

Alignments of top-scoring domains:
PF03291.7.fs: domain 1 of 2, from 136 to 171: score 32.9, E = 7.6e-10
                   *->egeaeteknitdvVaaHLpaQPEGVvLFYnerDEKitDGviLLDkes
                      e+  ++e+++++ VaaH           Yne+            +e+
    KIAA0398   136    EKQKNLEEGHSSTVAAH-----------YNEL------------QEV 159  

                   gidlkkRqdSpIdq<-*
                   g  l+kR++S+I++   
    KIAA0398   160 G--LEKRSQSRIFY    171  

PF03291.7.ls: domain 1 of 1, from 136 to 476: score 625.4, E = 4.4e-185
                   *->egeaeteknitdvVaaHLpaQPEGVvLFYnerDEKitDGviLLDkes
                      e+  ++e+++++ VaaH           Yne+            +e+
    KIAA0398   136    EKQKNLEEGHSSTVAAH-----------YNEL------------QEV 159  

                   gidlkkRqdSpIdqavNiiyrymssePvifgedsiFlefkkFsNDkgfpk
                   g  l+kR++S+I++                                    
    KIAA0398   160 G--LEKRSQSRIFY------------------------------------ 171  

                   EygtgklvlndgvrYlNnIycLeFkNiHnrvGikivvvPikfIvEFSflg
                                                                     
    KIAA0398     - -------------------------------------------------- -    

                   elikpridktmkylfknYYGNqlkVilehlrdqeikvGLDtvGiDYLYdv
                                                                     
    KIAA0398     - -------------------------------------------------- -    

                   FkedklsdvgknlaNdkvrlnpdvsyftnkrtRGPLrnFNNwIKslLIse
                                                      LrnFNNw+Ks+LI+e
    KIAA0398   172 -----------------------------------LRNFNNWMKSVLIGE 186  

                   yasKtfqeksmGpkrkVLdldCGKGGDLlKydkagIsgligtDIaevSie
                   +++K++q k   ++++VLdl+CGKGGDLlK+ k++I +l++tDIa+vS++
    KIAA0398   187 FLEKVRQKKK--RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVK 234  

                   qaqeRYtnsndlnsrskskyykfdFeaefitgDcflesvrevleppfPqk
                   q+q+RY   +d++ r++s+y+   F+aefit+D+ +e++ +++++p    
    KIAA0398   235 QCQQRY---EDMKNRRDSEYI---FSAEFITADSSKELLIDKFRDP---- 274  

                   erkFPvDivScQFAiHYSFeseekArtiLrNvaelLasGGkfIgTtpDgd
                   ++ F  Di+ScQF++HYSFes+e+A+ +LrN++e+L +GG+fIgTtp+++
    KIAA0398   275 QMCF--DICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF 322  

                   fIikkLtakktevekksfGNsvYkvsFekeYskedtkfrPpfGqkyvfnL
                   ++i++L+a    +e++sfGN++Y+v+F+k+      + +P+fG+ky+fnL
    KIAA0398   323 ELIRRLEA----SETESFGNEIYTVKFQKK------GDYPLFGCKYDFNL 362  

                   edavtdvpEYlVpFetLvelaeeYgleLvdkktFadiyeEeikkerskml
                   e++v dvpE+lV+F+ L e+a++Y+++Lv+kktF+++yeE+ik++++kml
    KIAA0398   363 EGVV-DVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKML 411  

                   lkrmsgLesrkatkNsKLvSeknddyehavsnnffelnrlalgtlegdEw
                   lkrm++Le+++a + sKLvSek+ddyeha+++++++++rl+lgtl+++Ew
    KIAA0398   412 LKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEW 461  

                   EAalnlYlvFvFeKrk<-*
                   EA++ +YlvF+FeK++   
    KIAA0398   462 EATS-IYLVFAFEKQQ    476  

PF03291.7.fs: domain 2 of 2, from 172 to 476: score 598.3, E = 6.5e-177
                   *->LrnFNNwIKslLIseyasKtfqeksmGpkrkVLdldCGKGGDLlKyd
                      LrnFNNw+Ks+LI+e+++K++q k   ++++VLdl+CGKGGDLlK+ 
    KIAA0398   172    LRNFNNWMKSVLIGEFLEKVRQKKK--RDITVLDLGCGKGGDLLKWK 216  

                   kagIsgligtDIaevSieqaqeRYtnsndlnsrskskyykfdFeaefitg
                   k++I +l++tDIa+vS++q+q+RY   +d++ r++s+y+   F+aefit+
    KIAA0398   217 KGRINKLVCTDIADVSVKQCQQRY---EDMKNRRDSEYI---FSAEFITA 260  

                   DcflesvrevleppfPqkerkFPvDivScQFAiHYSFeseekArtiLrNv
                   D+ +e++ +++++p    ++ F  Di+ScQF++HYSFes+e+A+ +LrN+
    KIAA0398   261 DSSKELLIDKFRDP----QMCF--DICSCQFVCHYSFESYEQADMMLRNA 304  

                   aelLasGGkfIgTtpDgdfIikkLtakktevekksfGNsvYkvsFekeYs
                   +e+L +GG+fIgTtp+++++i++L+a    +e++sfGN++Y+v+F+k+  
    KIAA0398   305 CERLSPGGYFIGTTPNSFELIRRLEA----SETESFGNEIYTVKFQKK-- 348  

                   kedtkfrPpfGqkyvfnLedavtdvpEYlVpFetLvelaeeYgleLvdkk
                       + +P+fG+ky+fnLe++v dvpE+lV+F+ L e+a++Y+++Lv+kk
    KIAA0398   349 ----GDYPLFGCKYDFNLEGVV-DVPEFLVYFPLLNEMAKKYNMKLVYKK 393  

                   tFadiyeEeikkerskmllkrmsgLesrkatkNsKLvSeknddyehavsn
                   tF+++yeE+ik++++kmllkrm++Le+++a + sKLvSek+ddyeha+++
    KIAA0398   394 TFLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKY 443  

                   nffelnrlalgtlegdEwEAalnlYlvFvFeKrk<-*
                   ++++++rl+lgtl+++EwEA++ +YlvF+FeK++   
    KIAA0398   444 MKNSQVRLPLGTLSKSEWEATS-IYLVFAFEKQQ    476  

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