hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01495843/chunk_1/iprscan-20080502-01495843.nocrc
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Query sequence: KIAA0397
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00164                                                 139.5    3.6e-37   1
SM00593                                                  70.4    2.3e-16   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00593     1/1     138   198 ..     1    68 []    70.4  2.3e-16
SM00164     1/1     573   976 ..     1   310 []   139.5  3.6e-37

Alignments of top-scoring domains:
SM00593: domain 1 of 1, from 138 to 198: score 70.4, E = 2.3e-16
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      ++ w+r aL ek+L++ +++L++++   skyYe++A+l++    p+ 
    KIAA0397   138    KHVWVRTALIEKVLDKVVQYLAENC---SKYYEKEALLAD----PVF 177  

                   geqlltlLqgLsaldfnlpvd<-*
                   g +l++lL+g++al+++  ++   
    KIAA0397   178 GPILASLLVGPCALEYTKLKT    198  

SM00164: domain 1 of 1, from 573 to 976: score 139.5, E = 3.6e-37
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      +++G+ +++R++VW++Ll++++   s+ e+ q             d+
    KIAA0397   573    YYGGIEHEIRKDVWPFLLGHYKFGMSKKEMEQV------------DA 607  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                       +Y++ l +++ +++                                
    KIAA0397   608 VVAARYQQVLAEWKACEVVVR----------------------------- 628  

                   dqIekDlkRtfpelsfFqfrsrd.nqk.......................
                          +R    ++   ++++ ++ ++++ ++  +++++ +++   + +
    KIAA0397   629 -------QREREAHPATRTKFSSgSSIdshvqrlihrdstisndvfisvd 671  

                   ..................................................
                   + ++++++++++++++++++ +++++++   +++++ + ++++++ ++++
    KIAA0397   672 dleppepqdpedsrpkpeqeagpgtpgtavveqqhsvefdspdsglpssr 721  

                   ..................................................
                   + +  ++ +++ +++++ + ++++++++++++++++  ++ +++++++++
    KIAA0397   722 nysvasgiqssldegqsvgfeeedgggeegssgpgpaahtlrepqdpsqe 771  

                   .........................................evll.d.de
                   +++ ++ + +++         + +  ++   + ++ +++ ++ + +    
    KIAA0397   772 kpqageleageelaavcaaaytielldtvalnlhridkdvqRCDRnYwYF 821  

                   ngpgqesLrrvLkaYslynpehivgYcQGmnflaapLLlvmpiydEedAF
                    +p++e+Lr+v+  Y + + +  vgY+QGm++l+apLL++++  +++ A+
    KIAA0397   822 TPPNLERLRDVMCSYVWEHLD--VGYVQGMCDLLAPLLVTLD--NDQLAY 867  

                   wcfvkLmerylpnflfkdtnnfytpdlsglqadqlvldslleeylPeLyk
                    cf++Lm+r+ +nf+          +   ++  + +++sl+++ + eL++
    KIAA0397   868 SCFSHLMKRMSQNFP----------NGGAMDTHFANMRSLIQILDSELFE 907  

                   HLqeqdkqskkkhvdkleidpslyalrWfLtlFarelPledvlRiwDvlf
                    + ++            + +   +++rWfL+ F+rel +edv+ +w+v++
    KIAA0397   908 LMHQN-----------GDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIW 946  

                   aellrlgseflfkialaiLklnedkllkld<-*
                   a    ++++f+++iala++  +++++ +++   
    KIAA0397   947 AARHISSEHFVLFIALALVEAYREIIRDNN    976  

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