hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01495843/chunk_1/iprscan-20080502-01495843.nocrc
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Query sequence: KIAA0397
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.ls RUN domain                                     175.4    1.3e-49   1
PF02759.9.fs RUN domain                                     173.6    1.3e-49   1
PF00566.9.fs TBC domain                                      19.5    3.6e-05   1
PF00566.9.ls TBC domain                                     -36.2    4.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1      52   199 ..     1   174 []   173.6  1.3e-49
PF02759.9.ls   1/1      52   199 ..     1   174 []   175.4  1.3e-49
PF00566.9.ls   1/1     768   975 ..     1   219 []   -36.2  4.7e-05
PF00566.9.fs   1/1     806   858 ..    48   104 ..    19.5  3.6e-05

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 52 to 199: score 173.6, E = 1.3e-49
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC+a+eA+l+H+L+r                        +a+++l+
    KIAA0397    52    ALCGAVEACLLHQLRR------------------------RAAGFLR 74   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLae..KrSs
                   s++     +++l      +++++k++pva +++h+v++++q+ae++K+S+
    KIAA0397    75 SDK-----MAAL------FTKVGKTCPVAGEICHKVQELQQQAEgrKPSG 113  

                   viktavgrgR..............KyAWiRlaLneksLssylklLlsdee
                   v+++a+ r+ + +++ +  +++  K++W+R+aL ek+L++ +++L+++++
    KIAA0397   114 VSQEALRRQGsasgkapalspqalKHVWVRTALIEKVLDKVVQYLAENCS 163  

                   llrkyYkpnAlLrdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                      kyY+++AlL+dp  ++g  il+slL+g++al+++ +lk++   
    KIAA0397   164 ---KYYEKEALLADP--VFG-PILASLLVGPCALEYT-KLKTA    199  

PF02759.9.ls: domain 1 of 1, from 52 to 199: score 175.4, E = 1.3e-49
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LC+a+eA+l+H+L+r                        +a+++l+
    KIAA0397    52    ALCGAVEACLLHQLRR------------------------RAAGFLR 74   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLae..KrSs
                   s++     +++l      +++++k++pva +++h+v++++q+ae++K+S+
    KIAA0397    75 SDK-----MAAL------FTKVGKTCPVAGEICHKVQELQQQAEgrKPSG 113  

                   viktavgrgR..............KyAWiRlaLneksLssylklLlsdee
                   v+++a+ r+ + +++ +  +++  K++W+R+aL ek+L++ +++L+++++
    KIAA0397   114 VSQEALRRQGsasgkapalspqalKHVWVRTALIEKVLDKVVQYLAENCS 163  

                   llrkyYkpnAlLrdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                      kyY+++AlL+dp  ++g  il+slL+g++al+++ +lk++   
    KIAA0397   164 ---KYYEKEALLADP--VFG-PILASLLVGPCALEYT-KLKTA    199  

PF00566.9.ls: domain 1 of 1, from 768 to 975: score -36.2, E = 4.7e-05
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                           ps  +++  ++  g        a + ++ll   +        
    KIAA0397   768    -----PSQEKPQAGELEAGEELAAVCAAAYTIELLDTVALNLHR--- 806  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                    I+kDv+R    +  F      +   +Lr v   Y+w   dvgY+QGM  
    KIAA0397   807 -IDKDVQRCDRNYWYFT-P---PNLERLRDVMCSYVWEHLDVGYVQGMCD 851  

                   vaApfLllykSEeqAFyfLdrLlenv...vPlKYylpdldGvrlDqkvLd
                   + Ap+L+       A+ ++  L+   +++ P       +d+  +  +   
    KIAA0397   852 LLAPLLVTLDNDQLAYSCFSHLMKRMsqnFPN---GGAMDTHFANMR--- 895  

                   sfveellprLYeYLlskgvdlkvv.sLpwfLsLyattlPleeAlrIfDiL
                   s +  l+ +L+e + + g     +    wfL  +   l  e  + ++   
    KIAA0397   896 SLIQILDSELFELMHQNGDYTHFYfCYRWFLLDFKRELLYEDVFAVWEVI 945  

                   FadGi....vllfrvaLAvLkilkeqiLda<-*
                    a    ++++  + +aLA    ++e i d    
    KIAA0397   946 WAARHisseHFVLFIALALVEAYREIIRDN    975  

PF00566.9.fs: domain 1 of 1, from 806 to 858: score 19.5, E = 3.6e-05
                   *->kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQG
                      +I+kDv+R    +  F      +   +Lr v   Y+w   dvgY+QG
    KIAA0397   806    RIDKDVQRCDRNYWYFT-P---PNLERLRDVMCSYVWEHLDVGYVQG 848  

                   MNVvaApfLl<-*
                   M  + Ap+L+   
    KIAA0397   849 MCDLLAPLLV    858  

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