hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01364285/chunk_1/iprscan-20080502-01364285.nocrc
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Query sequence: KIAA0389
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1287.9          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      62   783 ..     1   771 []  1287.9        0

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 62 to 783: score 1287.9, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                       +++ +++VeD++ L+yLnE+++lhN k+RY kd IYTY  ++L+av
    KIAA0389    62    AEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAV 108  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPY ++p iY+ e ik Y+      Gks+g  pPHvFAiAD+A+r+M+  
    KIAA0389   109 NPYFDIPKIYSSEAIKSYQ------GKSLGTRPPHVFAIADKAFRDMKVL 152  

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                   k++QsIi+SGESGAGKTE+tK++++YL+   g ++ + d+i+e+NP+LEA
    KIAA0389   153 KMSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEA 202  

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                   FGNAKTvRNnNSSRFGKf+eIhF+ek+++vG+ +++YLLEKSR++ Q k 
    KIAA0389   203 FGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKE 252  

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggt.pfan.k.
                   ERNYHIFY L+aGase+ +++l+Ls    sp++++YLn g+t++fan+++
    KIAA0389   253 ERNYHIFYRLCAGASEDIREKLHLS----SPDNFRYLNRGCTrYFANkEt 298  

                   r...........yssgcltvd.giDDaeeFkeTdEvtlkAmrvlGfseeE
                   +++  +++++++y+++ + +d+  DD  +F +    +++Am+ +G+++eE
    KIAA0389   299 DkqilqnrkspeYLKAGSMKDpLLDDHGDFIR----MCTAMKKIGLDDEE 344  

                   qesIFrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLg
                   + + Fr++A++LHLGNi+Fee +   ++++ ++lk ++ ++l+++AeLLg
    KIAA0389   345 KLDLFRVVAGVLHLGNIDFEEAG---STSGGCNLKNKSAQSLEYCAELLG 391  

                   vdpeeLekaLtkRkiktggeg..gsvitkplnveqAvyaRDALAKaiYsR
                   +d+++L+ +Lt+R++ t+ +g++g+vi++pl+veqA++aRDALAK++Ys+
    KIAA0389   392 LDQDDLRVSLTTRVMLTTAGGtkGTVIKVPLKVEQANNARDALAKTVYSH 441  

                   LFdWLVkrINksl....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKL
                   LFd++V+r+N+  + ++s+yfIGVLDI+GFE+Fe+NSFEQfCINy+NEKL
    KIAA0389   442 LFDHVVNRVNQCFpfetSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 491  

                   QQfFnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGI
                   QQfFn++++K+EQE Y++EG+ + ++ ++  DNQ+ciDLIE+K+    GI
    KIAA0389   492 QQFFNERILKEEQELYQKEGLGVNEVHYV--DNQDCIDLIEAKL---VGI 536  

                   lslLDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkS.lkk
                   l++LDEe ++   P+ +Dq+F++       hq+hk+h +++ prkS+l  
    KIAA0389   537 LDILDEENRL---PQPSDQHFTSAV-----HQKHKDHFRLTIPRKSkL-- 576  

                   gkp.kkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSkn
                    + ++  +++++Fii+H+AG V+Y++++F+eKN+D L+ +l++L+++S++
    KIAA0389   577 -AVhRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRD 625  

                   pliasLFpeeadqsssaakekssggagksrkagrrepskgtisskkrppT
                   ++i++LF++++ ++++++++ +                      k ++++
    KIAA0389   626 KFIRELFESSTNNNKDTKQKAG----------------------KLSFIS 653  

                   vGsqFk.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLryl
                   vG +Fk++Ln L+++L+st   FIRCIKPN ++ +++F++  +l QL+++
    KIAA0389   654 VGNKFKtQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCS 703  

                   GvLEniRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdak
                   G+  ++ +++ G+P+R +f+e +++Yk+ +p+++++           d++
    KIAA0389   704 GMVSVLDLMQGGYPSRASFHELYNMYKKYMPDKLARL----------DPR 743  

                   kacealLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-
                    +c+al+++lg       l+e++y++G TKvF+R pg +ae++++++   
    KIAA0389   744 LFCKALFKALG-------LNENDYKFGLTKVFFR-PGKFAEFDQIMKS   783  

                   *
                    
    KIAA0389     -   -    

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