hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01350594/chunk_1/iprscan-20080502-01350594.nocrc
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Query sequence: KIAA0388
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00317                                                 144.3    1.2e-38   1
SM00717                                                  30.0    0.00032   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00717    1/2     139   267 ..     1    53 []     0.7       76
SM00717    2/2     434   482 ..     1    53 []    29.3  0.00051
SM00317    1/1     617   738 ..     1   114 []   144.3  1.2e-38

Alignments of top-scoring domains:
SM00717: domain 1 of 2, from 139 to 267: score 0.7, E = 76
                   *->kkgeWteeEdelLleavkkyGkg........................
                       ++e  ee++  ++e+++ y+ + +++++  +++   ++    +  +
    KIAA0388   139    MGDEVKEEDETFIEELINNYDGKvhgeeemipgsvlisdavflelvd 185  

                   ..................................................
                     ++ ++++++++++++++++++++++ + +++++++  ++++++++++ 
    KIAA0388   186 alnqysdeeeeghndtsdgkqddskedlpvtrkrkrhaiegnkksskkqf 235  

                   .tdndWakIakelp.gRtpkqcrerwrnllkp<-*
                   ++d  +++Ia+++p++  p + +er+r+l ++   
    KIAA0388   236 pNDMIFSAIASMFPeNGVPDDMKERYRELTEM    267  

SM00717: domain 2 of 2, from 434 to 482: score 29.3, E = 0.00051
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      +  eWt  E+ l++  + +y     n++++Ia+ l+++t+kq+ +++
    KIAA0388   434    EPVEWTGAEESLFRVFHGTYF----NNFCSIARLLGTKTCKQVFQFA 476  

                   rnllkp<-*
                    +       
    KIAA0388   477 VKESLI    482  

SM00317: domain 1 of 1, from 617 to 738: score 144.3, E = 1.2e-38
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      ++l +++s+ +GwG + +e+  k+efI ey+Ge+i++++ +++++  
    KIAA0388   617    KHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELIsqdeadrrgkvy 663  

                   .....fylfd.....ciDatranggkGniarfiNHSCePNcelifvevdg
                   ++  +++lf+ +++ ++Datr    kGn++rf NHS +PNc++++v+v+g
    KIAA0388   664 dkymsSFLFNlnndfVVDATR----KGNKIRFANHSVNPNCYAKVVMVNG 709  

                   fdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                             d+ri+ifA+r I +GEEL++dY ++  ++   
    KIAA0388   710 ----------DHRIGIFAKRAIQAGEELFFDYRYSQADA    738  

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