hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01350594/chunk_1/iprscan-20080502-01350594.nocrc
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Query sequence: KIAA0388
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00856.18.ls SET domain                                     183.5    4.9e-52   1
PF00856.18.fs SET domain                                     182.0    1.3e-51   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1     611   738 ..     1   259 []   182.0  1.3e-51
PF00856.18.ls   1/1     611   738 ..     1   259 []   183.5  4.9e-52

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 611 to 738: score 182.0, E = 1.3e-51
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+g +++l ++ ++++GwG + +e+++k+efi EY+Geli+++ea+
    KIAA0388   611    IQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQDEAD 657  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +r+      k yd +++     +lf+l++                     
    KIAA0388   658 RRG------KVYDKYMSS----FLFNLNN--------------------- 676  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA0388     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                      ++v+DAtrkGN +RF
    KIAA0388   677 -----------------------------------DFVVDATRKGNKIRF 691  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                    NHS +PNc+++vv+v+              gd+ri++fA+r I+aGeEL
    KIAA0388   692 ANHSVNPNCYAKVVMVN--------------GDHRIGIFAKRAIQAGEEL 727  

                   tydYgydksnge<-*
                   ++dY  ++  +    
    KIAA0388   728 FFDYR-YSQADA    738  

PF00856.18.ls: domain 1 of 1, from 611 to 738: score 183.5, E = 4.9e-52
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+g +++l ++ ++++GwG + +e+++k+efi EY+Geli+++ea+
    KIAA0388   611    IQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQDEAD 657  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +r+      k yd +++     +lf+l++                     
    KIAA0388   658 RRG------KVYDKYMSS----FLFNLNN--------------------- 676  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA0388     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                      ++v+DAtrkGN +RF
    KIAA0388   677 -----------------------------------DFVVDATRKGNKIRF 691  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                    NHS +PNc+++vv+v+              gd+ri++fA+r I+aGeEL
    KIAA0388   692 ANHSVNPNCYAKVVMVN--------------GDHRIGIFAKRAIQAGEEL 727  

                   tydYgydksnge<-*
                   ++dY  ++  +    
    KIAA0388   728 FFDYR-YSQADA    738  

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