# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj00039.fasta.huge -Q ../query/KIAA0388.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA0388, 751 aa
vs ./tmplib.23147 library
1986754 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 5.3716+/-0.00589; mu= 15.6020+/- 0.401
mean_var=140.2175+/-32.933, 0's: 0 Z-trim: 10 B-trim: 15 in 1/39
Lambda= 0.108311
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1090 ( 715 res) hk03921a ( 715) 347 66.1 1.4e-11
KIAA1076 ( 804 res) hj06779 ( 804) 333 64.0 6.6e-11
KIAA1732 ( 1915 res) bg00050 (1915) 322 62.8 3.6e-10
KIAA0339 ( 1709 res) hg01304(revised) (1709) 316 61.8 6.4e-10
KIAA0304 ( 2415 res) af07172 (2415) 307 60.6 2.1e-09
KIAA1876 ( 803 res) pf01162s1 ( 803) 211 45.0 3.6e-05
KIAA0067 ( 1300 res) ha01038 (1300) 173 39.3 0.0029
>>KIAA1090 ( 715 res) hk03921a (715 aa)
initn: 333 init1: 171 opt: 347 Z-score: 300.1 bits: 66.1 E(): 1.4e-11
Smith-Waterman score: 362; 32.479% identity (58.120% similar) in 234 aa overlap (506-731:317-529)
480 490 500 510 520 530
KIAA03 AVKESLILKLPTDELMNPSQKKKRKHRLWAAHCRKIQLKKDNSSTQVYNYQPCDHPDRPC
:. :.:.:... :: . .: : .
KIAA10 FPYMEGDRGSRYQGVRGIGRVFKNALQEAEARFREIKLQREARETQESERKP--PPYKHI
290 300 310 320 330 340
540 550 560 570 580 590
KIAA03 DSTCPC----IMTQNFCE-KFCQCNPDCQNRFPGCRCKTQCNTKQCPCYLAVRECDPDLC
. : :.: .. : :.:.: .: : : ..: .. . . :: :..:
KIAA10 KVNKPYGKVQIYTADISEIPKCNCKPTDEN--P-CGFDSECLNR-----MLMFECHPQVC
350 360 370 380 390
600 610 620 630 640
KIAA03 LTCGASEHWDCKVVSCKN-CSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGE
:.: :.: : .: . .. .: ::: :....:.::..:: ::
KIAA10 ---PAGEF-------CQNQCFTKRQYPETKIIK-TDGKGWGLVAKRDIRKGEFVNEYVGE
400 410 420 430 440
650 660 670 680 690 700
KIAA03 LISQDEADRRGK-VYDKYMSSF-LFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVVMV
::...: : : .... .. : ......: ..:: ::: :: ::: .::: . :
KIAA10 LIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETLKWTV
450 460 470 480 490 500
710 720 730 740 750
KIAA03 NGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
::: :.:.:: : :: :: :.:
KIAA10 NGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLGDRPKTSTTLSSE
510 520 530 540 550 560
>>KIAA1076 ( 804 res) hj06779 (804 aa)
initn: 373 init1: 237 opt: 333 Z-score: 287.7 bits: 64.0 E(): 6.6e-11
Smith-Waterman score: 333; 41.935% identity (69.355% similar) in 124 aa overlap (616-737:664-787)
590 600 610 620 630 640
KIAA03 DPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISE
::.: . : . :: : : . .:.. :
KIAA10 ERRSEQRRLLSSFTGSCDSDLLKFNQLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIE
640 650 660 670 680 690
650 660 670 680 690 700
KIAA03 YCGELISQDEADRRGKVY-DKYM-SSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAK
: :. : : :: : : : :. . ::..: ...: ..:::. :: :: ::: :::::::
KIAA10 YVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAK
700 710 720 730 740 750
710 720 730 740 750
KIAA03 VVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
:. :.....: :..:. :...::. .::.. :
KIAA10 VITVESQKKIVIYSKQHINVNEEITYDYKFPIEDVKIPCLCGSENCRGTLN
760 770 780 790 800
>>KIAA1732 ( 1915 res) bg00050 (1915 aa)
initn: 340 init1: 206 opt: 322 Z-score: 274.5 bits: 62.8 E(): 3.6e-10
Smith-Waterman score: 338; 31.551% identity (59.358% similar) in 187 aa overlap (552-735:850-1021)
530 540 550 560 570 580
KIAA03 VYNYQPCDHPDRPCDSTCPCIMTQNFCEKFCQCNPDCQN-RFPGCRCKTQCNTKQCPCYL
:.:.: .. : : . :. ..: :
KIAA17 MPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQG---EIACG-EDCLNRL
820 830 840 850 860 870
590 600 610 620 630 640
KIAA03 AVRECDPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKN
. ::. : ... :.: .:: . . . .. ::: ... .:
KIAA17 LMIECSS----RCPNGDY-------CSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSN
880 890 900 910 920
650 660 670 680 690
KIAA03 EFISEYCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNP
:. :::::.... : : : : .: . ... :.:: ..:::.::: :: ::: .:
KIAA17 TFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEP
930 940 950 960 970 980
700 710 720 730 740 750
KIAA03 NCYAKVVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
:: .. :::. :.:.:. . . .: :: :::....
KIAA17 NCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGEN
990 1000 1010 1020 1030 1040
KIAA17 RVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLT
1050 1060 1070 1080 1090 1100
>>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa)
initn: 418 init1: 228 opt: 316 Z-score: 269.9 bits: 61.8 E(): 6.4e-10
Smith-Waterman score: 316; 39.516% identity (66.129% similar) in 124 aa overlap (616-737:1569-1692)
590 600 610 620 630 640
KIAA03 DPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISE
::.: .. : . :: : : . .:.. :
KIAA03 RSEQRRLLSAIGTSAIMDSDLLKLNQLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIE
1540 1550 1560 1570 1580 1590
650 660 670 680 690 700
KIAA03 YCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAK
: :. : : :: : : : . ::.:: ...: ..:::. :: :: :: .::::::
KIAA03 YVGQNIRQMVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAK
1600 1610 1620 1630 1640 1650
710 720 730 740 750
KIAA03 VVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
:. ......: :..:. : . ::. .::.. :
KIAA03 VITIESQKKIVIYSKQPIGVDEEITYDYKFPLEDNKIPCLCGTESCRGSLN
1660 1670 1680 1690 1700
>>KIAA0304 ( 2415 res) af07172 (2415 aa)
initn: 285 init1: 213 opt: 307 Z-score: 260.7 bits: 60.6 E(): 2.1e-09
Smith-Waterman score: 307; 43.590% identity (70.085% similar) in 117 aa overlap (624-738:2282-2397)
600 610 620 630 640 650
KIAA03 GASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQ
: . : : : :.... .:.. :: : .: .
KIAA03 TRRATSLELPMAMRFRHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRS
2260 2270 2280 2290 2300 2310
660 670 680 690 700 710
KIAA03 DEADRRGKVYD-KYMSSFLFNLNNDF-VVDATRKGNKIRFANHSVNPNCYAKVVMVNGDH
.:.: : :: : .. ..: .. :: ::::: .:: :: ::: .:::...:. :.:..
KIAA03 VLTDKREKFYDGKGIGCYMFRMD-DFDVVDATMHGNAARFINHSCEPNCFSRVIHVEGQK
2320 2330 2340 2350 2360 2370
720 730 740 750
KIAA03 RIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
.: ::: : : :::: .::.. ::
KIAA03 HIVIFALRRILRGEELTYDYKFPIEDASNKLPCNCGAKRCRRFLN
2380 2390 2400 2410
>>KIAA1876 ( 803 res) pf01162s1 (803 aa)
initn: 216 init1: 114 opt: 211 Z-score: 184.7 bits: 45.0 E(): 3.6e-05
Smith-Waterman score: 211; 27.950% identity (52.174% similar) in 161 aa overlap (526-676:651-798)
500 510 520 530 540 550
KIAA03 KKKRKHRLWAAHCRKIQLKKDNSSTQVYNYQPCDHPDRPCDSTC---PCIMTQNFCE-KF
.:: . ...: : . .:. . ..
KIAA18 RPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY
630 640 650 660 670 680
560 570 580 590 600
KIAA03 CQCNPDCQNRFPGC-----RCKTQCNTKQCPCYLAVRECDPDLCLTCG-ASEHWDCKVVS
: : ::.. : :: . . . : . .: : . :. : : .
KIAA18 CVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEF---NMAEPPLIFECNHACSCWR----N
690 700 710 720 730
610 620 630 640 650 660
KIAA03 CKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQDEADRRGKVYDK
:.: .: ::. .: : . :::. ... . :. :: :::::..::: : .
KIAA18 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE----
740 750 760 770 780
670 680 690 700 710 720
KIAA03 YMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVVMVNGDHRIGIFAKRAIQAGE
.:.::.:.:
KIAA18 --DSYLFDLDNKISSA
790 800
>>KIAA0067 ( 1300 res) ha01038 (1300 aa)
initn: 283 init1: 104 opt: 173 Z-score: 150.4 bits: 39.3 E(): 0.0029
Smith-Waterman score: 190; 22.597% identity (47.792% similar) in 385 aa overlap (372-686:508-878)
350 360 370 380 390 400
KIAA03 FLLLEGAKEYAMLHNPRSKCSGRRRRRHHIVSASCSNASASAVAETKEGDSDRDTGNDWA
:... :. .. :..:. : . :.
KIAA00 PQAGDSDLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSENVSG--GKPGINQTY
480 490 500 510 520 530
410 420 430 440 450
KIAA03 SSSSEANSRCQTPTKQKASPAPPQL--CVVEAPSEPVEWTGAEESLFRVFHGTYFNNFCS
: ... .:. : :::: . . .::.:: . . :.:: :. . ::
KIAA00 RSPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEP-SYRAPMEKLF------YLPHVCS
540 550 560 570 580
460 470 480 490 500 510
KIAA03 IARLLGTKTCKQVFQFAVKESLILKLPTD-ELMNPSQKKKRK---HRLWAAHC----RKI
. : .. .. :. :. :.. : : . :. .. .:: : .. . : : .
KIAA00 YTCLSRVRPMRNE-QYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTM
590 600 610 620 630 640
520 530 540 550
KIAA03 Q-LKK---DNSSTQVYNYQPCDHP----DRPCDSTCPCIMTQNF----------CEKFCQ
: ... ... .. . : : :: . : . .. : . .
KIAA00 QEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEID
650 660 670 680 690 700
560 570 580
KIAA03 CNPDCQ-----NRFPG--------------CRCKTQCNTK-QCPCY-LAVRE--CDP---
.: : .:.:: : :: : : .: :. :... : :
KIAA00 TTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQ
710 720 730 740 750 760
590 600 610 620 630
KIAA03 ------------DLCLTCGASE-HWDCKVVS--CKNCSIQRGLKKHLLLAPSDVAGWGTF
. :: :. : . :: : : .:.::. .: : .. :::
KIAA00 INPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIR
770 780 790 800 810 820
640 650 660 670 680 690
KIAA03 IKESVQKNEFISEYCGELISQDEADRRG-KVYDKYMSSFLFNLNNDFVVDATRKGNKIRF
... :. :. : :.....: ::..: .. :.:.. ::.. :. ..:
KIAA00 CLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFA----NLDHIESVENFKEGYESDA
830 840 850 860 870 880
700 710 720 730 740 750
KIAA03 ANHSVNPNCYAKVVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL
KIAA00 PCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQ
890 900 910 920 930 940
751 residues in 1 query sequences
1986754 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:19:32 2008 done: Thu Dec 18 15:19:32 2008
Total Scan time: 0.560 Total Display time: 0.160
Function used was FASTA [version 34.26.5 April 26, 2007]