# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj00039.fasta.huge -Q ../query/KIAA0388.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0388, 751 aa vs ./tmplib.23147 library 1986754 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.3716+/-0.00589; mu= 15.6020+/- 0.401 mean_var=140.2175+/-32.933, 0's: 0 Z-trim: 10 B-trim: 15 in 1/39 Lambda= 0.108311 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1090 ( 715 res) hk03921a ( 715) 347 66.1 1.4e-11 KIAA1076 ( 804 res) hj06779 ( 804) 333 64.0 6.6e-11 KIAA1732 ( 1915 res) bg00050 (1915) 322 62.8 3.6e-10 KIAA0339 ( 1709 res) hg01304(revised) (1709) 316 61.8 6.4e-10 KIAA0304 ( 2415 res) af07172 (2415) 307 60.6 2.1e-09 KIAA1876 ( 803 res) pf01162s1 ( 803) 211 45.0 3.6e-05 KIAA0067 ( 1300 res) ha01038 (1300) 173 39.3 0.0029 >>KIAA1090 ( 715 res) hk03921a (715 aa) initn: 333 init1: 171 opt: 347 Z-score: 300.1 bits: 66.1 E(): 1.4e-11 Smith-Waterman score: 362; 32.479% identity (58.120% similar) in 234 aa overlap (506-731:317-529) 480 490 500 510 520 530 KIAA03 AVKESLILKLPTDELMNPSQKKKRKHRLWAAHCRKIQLKKDNSSTQVYNYQPCDHPDRPC :. :.:.:... :: . .: : . KIAA10 FPYMEGDRGSRYQGVRGIGRVFKNALQEAEARFREIKLQREARETQESERKP--PPYKHI 290 300 310 320 330 340 540 550 560 570 580 590 KIAA03 DSTCPC----IMTQNFCE-KFCQCNPDCQNRFPGCRCKTQCNTKQCPCYLAVRECDPDLC . : :.: .. : :.:.: .: : : ..: .. . . :: :..: KIAA10 KVNKPYGKVQIYTADISEIPKCNCKPTDEN--P-CGFDSECLNR-----MLMFECHPQVC 350 360 370 380 390 600 610 620 630 640 KIAA03 LTCGASEHWDCKVVSCKN-CSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGE :.: :.: : .: . .. .: ::: :....:.::..:: :: KIAA10 ---PAGEF-------CQNQCFTKRQYPETKIIK-TDGKGWGLVAKRDIRKGEFVNEYVGE 400 410 420 430 440 650 660 670 680 690 700 KIAA03 LISQDEADRRGK-VYDKYMSSF-LFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVVMV ::...: : : .... .. : ......: ..:: ::: :: ::: .::: . : KIAA10 LIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETLKWTV 450 460 470 480 490 500 710 720 730 740 750 KIAA03 NGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL ::: :.:.:: : :: :: :.: KIAA10 NGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLGDRPKTSTTLSSE 510 520 530 540 550 560 >>KIAA1076 ( 804 res) hj06779 (804 aa) initn: 373 init1: 237 opt: 333 Z-score: 287.7 bits: 64.0 E(): 6.6e-11 Smith-Waterman score: 333; 41.935% identity (69.355% similar) in 124 aa overlap (616-737:664-787) 590 600 610 620 630 640 KIAA03 DPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISE ::.: . : . :: : : . .:.. : KIAA10 ERRSEQRRLLSSFTGSCDSDLLKFNQLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIE 640 650 660 670 680 690 650 660 670 680 690 700 KIAA03 YCGELISQDEADRRGKVY-DKYM-SSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAK : :. : : :: : : : :. . ::..: ...: ..:::. :: :: ::: ::::::: KIAA10 YVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAK 700 710 720 730 740 750 710 720 730 740 750 KIAA03 VVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL :. :.....: :..:. :...::. .::.. : KIAA10 VITVESQKKIVIYSKQHINVNEEITYDYKFPIEDVKIPCLCGSENCRGTLN 760 770 780 790 800 >>KIAA1732 ( 1915 res) bg00050 (1915 aa) initn: 340 init1: 206 opt: 322 Z-score: 274.5 bits: 62.8 E(): 3.6e-10 Smith-Waterman score: 338; 31.551% identity (59.358% similar) in 187 aa overlap (552-735:850-1021) 530 540 550 560 570 580 KIAA03 VYNYQPCDHPDRPCDSTCPCIMTQNFCEKFCQCNPDCQN-RFPGCRCKTQCNTKQCPCYL :.:.: .. : : . :. ..: : KIAA17 MPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQG---EIACG-EDCLNRL 820 830 840 850 860 870 590 600 610 620 630 640 KIAA03 AVRECDPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKN . ::. : ... :.: .:: . . . .. ::: ... .: KIAA17 LMIECSS----RCPNGDY-------CSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSN 880 890 900 910 920 650 660 670 680 690 KIAA03 EFISEYCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNP :. :::::.... : : : : .: . ... :.:: ..:::.::: :: ::: .: KIAA17 TFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEP 930 940 950 960 970 980 700 710 720 730 740 750 KIAA03 NCYAKVVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL :: .. :::. :.:.:. . . .: :: :::.... KIAA17 NCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGEN 990 1000 1010 1020 1030 1040 KIAA17 RVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLT 1050 1060 1070 1080 1090 1100 >>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa) initn: 418 init1: 228 opt: 316 Z-score: 269.9 bits: 61.8 E(): 6.4e-10 Smith-Waterman score: 316; 39.516% identity (66.129% similar) in 124 aa overlap (616-737:1569-1692) 590 600 610 620 630 640 KIAA03 DPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISE ::.: .. : . :: : : . .:.. : KIAA03 RSEQRRLLSAIGTSAIMDSDLLKLNQLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIE 1540 1550 1560 1570 1580 1590 650 660 670 680 690 700 KIAA03 YCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAK : :. : : :: : : : . ::.:: ...: ..:::. :: :: :: .:::::: KIAA03 YVGQNIRQMVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAK 1600 1610 1620 1630 1640 1650 710 720 730 740 750 KIAA03 VVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL :. ......: :..:. : . ::. .::.. : KIAA03 VITIESQKKIVIYSKQPIGVDEEITYDYKFPLEDNKIPCLCGTESCRGSLN 1660 1670 1680 1690 1700 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 285 init1: 213 opt: 307 Z-score: 260.7 bits: 60.6 E(): 2.1e-09 Smith-Waterman score: 307; 43.590% identity (70.085% similar) in 117 aa overlap (624-738:2282-2397) 600 610 620 630 640 650 KIAA03 GASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQ : . : : : :.... .:.. :: : .: . KIAA03 TRRATSLELPMAMRFRHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRS 2260 2270 2280 2290 2300 2310 660 670 680 690 700 710 KIAA03 DEADRRGKVYD-KYMSSFLFNLNNDF-VVDATRKGNKIRFANHSVNPNCYAKVVMVNGDH .:.: : :: : .. ..: .. :: ::::: .:: :: ::: .:::...:. :.:.. KIAA03 VLTDKREKFYDGKGIGCYMFRMD-DFDVVDATMHGNAARFINHSCEPNCFSRVIHVEGQK 2320 2330 2340 2350 2360 2370 720 730 740 750 KIAA03 RIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL .: ::: : : :::: .::.. :: KIAA03 HIVIFALRRILRGEELTYDYKFPIEDASNKLPCNCGAKRCRRFLN 2380 2390 2400 2410 >>KIAA1876 ( 803 res) pf01162s1 (803 aa) initn: 216 init1: 114 opt: 211 Z-score: 184.7 bits: 45.0 E(): 3.6e-05 Smith-Waterman score: 211; 27.950% identity (52.174% similar) in 161 aa overlap (526-676:651-798) 500 510 520 530 540 550 KIAA03 KKKRKHRLWAAHCRKIQLKKDNSSTQVYNYQPCDHPDRPCDSTC---PCIMTQNFCE-KF .:: . ...: : . .:. . .. KIAA18 RPSPVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQY 630 640 650 660 670 680 560 570 580 590 600 KIAA03 CQCNPDCQNRFPGC-----RCKTQCNTKQCPCYLAVRECDPDLCLTCG-ASEHWDCKVVS : : ::.. : :: . . . : . .: : . :. : : . KIAA18 CVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEF---NMAEPPLIFECNHACSCWR----N 690 700 710 720 730 610 620 630 640 650 660 KIAA03 CKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKNEFISEYCGELISQDEADRRGKVYDK :.: .: ::. .: : . :::. ... . :. :: :::::..::: : . KIAA18 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE---- 740 750 760 770 780 670 680 690 700 710 720 KIAA03 YMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVVMVNGDHRIGIFAKRAIQAGE .:.::.:.: KIAA18 --DSYLFDLDNKISSA 790 800 >>KIAA0067 ( 1300 res) ha01038 (1300 aa) initn: 283 init1: 104 opt: 173 Z-score: 150.4 bits: 39.3 E(): 0.0029 Smith-Waterman score: 190; 22.597% identity (47.792% similar) in 385 aa overlap (372-686:508-878) 350 360 370 380 390 400 KIAA03 FLLLEGAKEYAMLHNPRSKCSGRRRRRHHIVSASCSNASASAVAETKEGDSDRDTGNDWA :... :. .. :..:. : . :. KIAA00 PQAGDSDLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSENVSG--GKPGINQTY 480 490 500 510 520 530 410 420 430 440 450 KIAA03 SSSSEANSRCQTPTKQKASPAPPQL--CVVEAPSEPVEWTGAEESLFRVFHGTYFNNFCS : ... .:. : :::: . . .::.:: . . :.:: :. . :: KIAA00 RSPLGSTASAPAPSALPAPPAPPVFHGMLERAPAEP-SYRAPMEKLF------YLPHVCS 540 550 560 570 580 460 470 480 490 500 510 KIAA03 IARLLGTKTCKQVFQFAVKESLILKLPTD-ELMNPSQKKKRK---HRLWAAHC----RKI . : .. .. :. :. :.. : : . :. .. .:: : .. . : : . KIAA00 YTCLSRVRPMRNE-QYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTM 590 600 610 620 630 640 520 530 540 550 KIAA03 Q-LKK---DNSSTQVYNYQPCDHP----DRPCDSTCPCIMTQNF----------CEKFCQ : ... ... .. . : : :: . : . .. : . . KIAA00 QEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEID 650 660 670 680 690 700 560 570 580 KIAA03 CNPDCQ-----NRFPG--------------CRCKTQCNTK-QCPCY-LAVRE--CDP--- .: : .:.:: : :: : : .: :. :... : : KIAA00 TTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQ 710 720 730 740 750 760 590 600 610 620 630 KIAA03 ------------DLCLTCGASE-HWDCKVVS--CKNCSIQRGLKKHLLLAPSDVAGWGTF . :: :. : . :: : : .:.::. .: : .. ::: KIAA00 INPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIR 770 780 790 800 810 820 640 650 660 670 680 690 KIAA03 IKESVQKNEFISEYCGELISQDEADRRG-KVYDKYMSSFLFNLNNDFVVDATRKGNKIRF ... :. :. : :.....: ::..: .. :.:.. ::.. :. ..: KIAA00 CLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFA----NLDHIESVENFKEGYESDA 830 840 850 860 870 880 700 710 720 730 740 750 KIAA03 ANHSVNPNCYAKVVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL KIAA00 PCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQ 890 900 910 920 930 940 751 residues in 1 query sequences 1986754 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:32 2008 done: Thu Dec 18 15:19:32 2008 Total Scan time: 0.560 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]