hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01300304/chunk_1/iprscan-20080502-01300304.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0385 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06467.5.ls MYM-type Zinc finger 358.1 1.4e-104 9 PF06467.5.fs MYM-type Zinc finger 344.8 1.3e-100 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06467.5.fs 1/10 342 376 .. 1 43 [] 37.4 1.2e-09 PF06467.5.ls 1/9 342 376 .. 1 43 [] 39.2 1.3e-08 PF06467.5.ls 2/9 388 432 .. 1 43 [] 44.5 3.4e-10 PF06467.5.fs 2/10 388 432 .. 1 43 [] 42.5 4.7e-11 PF06467.5.ls 3/9 439 474 .. 1 43 [] 34.4 3.5e-07 PF06467.5.fs 3/10 439 474 .. 1 43 [] 32.6 2.6e-08 PF06467.5.ls 4/9 487 521 .. 1 43 [] 41.3 3.1e-09 PF06467.5.fs 4/10 487 521 .. 1 43 [] 39.5 3.1e-10 PF06467.5.ls 5/9 531 569 .. 1 43 [] 38.6 2e-08 PF06467.5.fs 5/10 531 569 .. 1 43 [] 36.7 1.9e-09 PF06467.5.fs 6/10 577 614 .. 1 43 [] 41.1 1.1e-10 PF06467.5.ls 6/9 577 614 .. 1 43 [] 43.0 9.6e-10 PF06467.5.fs 7/10 622 656 .. 1 43 [] 37.8 9.6e-10 PF06467.5.ls 7/9 622 656 .. 1 43 [] 39.5 1e-08 PF06467.5.fs 8/10 663 702 .. 1 43 [] 32.9 2.1e-08 PF06467.5.ls 8/9 663 702 .. 1 43 [] 34.8 2.7e-07 PF06467.5.fs 9/10 709 743 .. 1 43 [] 40.9 1.3e-10 PF06467.5.ls 9/9 709 743 .. 1 43 [] 42.7 1.1e-09 Alignments of top-scoring domains: PF06467.5.fs: domain 1 of 10, from 342 to 376: score 37.4, E = 1.2e-09 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +lFCS+sCl+++++k k++ C++Ckkei+n ++ KIAA0385 342 QLFCSSSCLTTFSKKPSGKKT--------CTFCKKEIWNTKDS 376 PF06467.5.ls: domain 1 of 9, from 342 to 376: score 39.2, E = 1.3e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +lFCS+sCl+++++k k++ C++Ckkei+n ++ KIAA0385 342 QLFCSSSCLTTFSKKPSGKKT--------CTFCKKEIWNTKDS 376 PF06467.5.ls: domain 2 of 9, from 388 to 432: score 44.5, E = 3.4e-10 *->klFCSesClskykrknnvkaglvtkrt..trCsyCkkeisnleel<- ++FC ++Cls y++++ ++ +++ ++++ trCs+C+k++++l+e+ KIAA0385 388 HEFCTSVCLSLYEAQQQRPIPQSGDPAdaTRCSICQKTGEVLHEV 432 * KIAA0385 - - PF06467.5.fs: domain 2 of 10, from 388 to 432: score 42.5, E = 4.7e-11 *->klFCSesClskykrknnvkaglvtkrt..trCsyCkkeisnleel<- ++FC ++Cls y++++ ++ +++ ++++ trCs+C+k++++l+e+ KIAA0385 388 HEFCTSVCLSLYEAQQQRPIPQSGDPAdaTRCSICQKTGEVLHEV 432 * KIAA0385 - - PF06467.5.ls: domain 3 of 9, from 439 to 474: score 34.4, E = 3.5e-07 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++ CS+sC+sk++++ + k+++ C++C+ +i+ + KIAA0385 439 HRLCSDSCFSKFRANKGLKTNC-------CDQCGAYIYTKTGS 474 PF06467.5.fs: domain 3 of 10, from 439 to 474: score 32.6, E = 2.6e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++ CS+sC+sk++++ + k+++ C++C+ +i+ + KIAA0385 439 HRLCSDSCFSKFRANKGLKTNC-------CDQCGAYIYTKTGS 474 PF06467.5.ls: domain 4 of 9, from 487 to 521: score 41.3, E = 3.1e-09 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k+FC++ Cl++yk+kn ++ + C +Ck++++n+e+l KIAA0385 487 KRFCNTTCLGAYKKKNTRVYP--------CVWCKTLCKNFEML 521 PF06467.5.fs: domain 4 of 10, from 487 to 521: score 39.5, E = 3.1e-10 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k+FC++ Cl++yk+kn ++ + C +Ck++++n+e+l KIAA0385 487 KRFCNTTCLGAYKKKNTRVYP--------CVWCKTLCKNFEML 521 PF06467.5.ls: domain 5 of 9, from 531 to 569: score 38.6, E = 2e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* lFCS +C ++yk+k++ +g++++ Cs+C++ s ++++ KIAA0385 531 SLFCSLCCTTSYKVKQAGLTGPPRP----CSFCRRSLSDPCYY 569 PF06467.5.fs: domain 5 of 10, from 531 to 569: score 36.7, E = 1.9e-09 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* lFCS +C ++yk+k++ +g++++ Cs+C++ s ++++ KIAA0385 531 SLFCSLCCTTSYKVKQAGLTGPPRP----CSFCRRSLSDPCYY 569 PF06467.5.fs: domain 6 of 10, from 577 to 614: score 41.1, E = 1.1e-10 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCS sC++k++r+ + g++++ C+yC++++s+++e+ KIAA0385 577 YQFCSPSCWTKFQRT-SPEGGIHLS----CHYCHSLFSGKPEV 614 PF06467.5.ls: domain 6 of 9, from 577 to 614: score 43.0, E = 9.6e-10 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCS sC++k++r+ + g++++ C+yC++++s+++e+ KIAA0385 577 YQFCSPSCWTKFQRT-SPEGGIHLS----CHYCHSLFSGKPEV 614 PF06467.5.fs: domain 7 of 10, from 622 to 656: score 37.8, E = 9.6e-10 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++FC+++C+ +kr +v+ + C++C++e++++e l KIAA0385 622 FQFCCRDCCEDFKRLRGVVSQ--------CEHCRQEKLLHEKL 656 PF06467.5.ls: domain 7 of 9, from 622 to 656: score 39.5, E = 1e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* ++FC+++C+ +kr +v+ + C++C++e++++e l KIAA0385 622 FQFCCRDCCEDFKRLRGVVSQ--------CEHCRQEKLLHEKL 656 PF06467.5.fs: domain 8 of 10, from 663 to 702: score 32.9, E = 2.1e-08 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k FCSe+C yk+++ +k gl++++ C+yC++++ ++++ KIAA0385 663 KSFCSEGCVLLYKQDFTKKLGLCCIT---CTYCSQTCQRGVTE 702 PF06467.5.ls: domain 8 of 9, from 663 to 702: score 34.8, E = 2.7e-07 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* k FCSe+C yk+++ +k gl++++ C+yC++++ ++++ KIAA0385 663 KSFCSEGCVLLYKQDFTKKLGLCCIT---CTYCSQTCQRGVTE 702 PF06467.5.fs: domain 9 of 10, from 709 to 743: score 40.9, E = 1.3e-10 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCSe+C sky ++++ a+ C+ Ck+++++le++ KIAA0385 709 WDFCSEDCKSKYLLWYCKAAR--------CHACKRQGKLLETI 743 PF06467.5.ls: domain 9 of 9, from 709 to 743: score 42.7, E = 1.1e-09 *->klFCSesClskykrknnvkaglvtkrttrCsyCkkeisnleel<-* +FCSe+C sky ++++ a+ C+ Ck+++++le++ KIAA0385 709 WDFCSEDCKSKYLLWYCKAAR--------CHACKRQGKLLETI 743 //