hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01264223/chunk_1/iprscan-20080502-01264223.nocrc
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Query sequence: KIAA0383
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  86.4    3.5e-21   2
SM00526                                                  43.3    3.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00526    1/1      93   170 ..     1    70 []    43.3  3.3e-08
SM00249    1/2     215   270 ..     1    39 []    31.5  0.00012
SM00249    2/2     271   318 ..     1    39 []    54.9    1e-11

Alignments of top-scoring domains:
SM00526: domain 1 of 1, from 93 to 170: score 43.3, E = 3.3e-08
                   *->pasHPpyse........MIteAItaLKERkGSSlqAIkKYIeanhyk
                      + s  ++ + ++ + ++++ +AI++L E++GSSl+ I KY+ ++  +
    KIAA0383    93    KGSRGSCNDlrnvdwnkLLRRAIEGLEEPNGSSLKNIEKYLRSQ-SD 138  

                   vlpnnnk..frklLklaLkklVasGkLvqvKGs<-*
                   +  ++n++ f+++L+l  k++V++G+L++  G+   
    KIAA0383   139 LTSTTNNpaFQQRLRLGAKRAVNNGRLLK-DGP    170  

SM00249: domain 1 of 2, from 215 to 270: score 31.5, E = 0.00012
                   *->yC.vCgk..........g.llqCdkgCdrwyHv.Clgpple....ep
                      +C++C +++++++++++++ll+C   C+ + H++Cl++ +e +++++
    KIAA0383   215    ICsFCLGtkesnrekkpEeLLSCA-DCGSSGHPsCLKFCPElttnVK 260  

                   dg.wyCprCk<-*
                     +w+C +Ck   
    KIAA0383   261 ALrWQCIECK    270  

SM00249: domain 2 of 2, from 271 to 318: score 54.9, E = 1e-11
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCpr
                      +C+ C+  +++ +++l+Cd +Cdr +H++C++ppl+++p+g w+C  
    KIAA0383   271    TCsACRVqgrnaDnMLFCD-SCDRGFHMeCCDPPLSrMPKGmWICQV 316  

                   Ck<-*
                   C+   
    KIAA0383   317 CR    318  

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