hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01213915/chunk_1/iprscan-20080502-01213915.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0380 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 234.1 1.2e-65 1 SM00228 76.5 3.3e-18 1 SM00315 61.7 9.1e-14 1 SM00233 43.0 3.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/1 72 140 .. 1 80 [] 76.5 3.3e-18 SM00315 1/1 330 449 .. 1 121 [] 61.7 9.1e-14 SM00325 1/1 755 939 .. 1 211 [] 234.1 1.2e-65 SM00233 1/1 983 1098 .. 1 82 [] 43.0 3.9e-08 Alignments of top-scoring domains: SM00228: domain 1 of 1, from 72 to 140: score 76.5, E = 3.3e-18 *->gglGfsivg..gifvssvvpGspAakaGrkslglLkvGDvIleVNGe g+Gf+++g++ ++v sv pG++A kaG +k+GD+I++VNG KIAA0380 72 HGFGFTVSGdrIVLVQSVRPGGAAMKAG------VKEGDRIIKVNG- 111 tsvegltheeavdllkkaggggvGekvtLtvlRgg<-* t v++ +h+e+v+l+k+ G v Lt+l + KIAA0380 112 TMVTNSSHLEVVKLIKS------GAYVALTLLGSS 140 SM00315: domain 1 of 1, from 330 to 449: score 61.7, E = 9.1e-14 *->sleklLendpiGrllFreFLksefseykenleFWlaveefkkaedee +lekl + p+ + +F ++ s+ + l+F+l++e +++a ++ KIAA0380 330 DLEKLK-SRPAHLGVFLRYIFSQADP--SPLLFYLCAEVYQQASPKD 373 rsskAreIydkylspeapkesevnldsdtreeieenlee..pppdlFdeA +s +++I++ +l+++ap +v +++ + +ei ++l +++ ++++++eA KIAA0380 374 SRSLGKDIWNIFLEKNAPL--RVKIPEMLQAEIDSRLRNseDARGVLCEA 421 qrevyell..ekdsyprFLkSdyYlrfL<-* q++ + +++ + y+ + + + + KIAA0380 422 QEAAMPEIqeQIHDYRTKRTLGLGSLYG 449 SM00325: domain 1 of 1, from 755 to 939: score 234.1, E = 1.2e-65 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl v++EL++TE++++r+L++l+ +f++++kke+ l++++e+ +l KIAA0380 755 VINELFVTEASHLRTLRVLDLIFYQRMKKEN------LMPREELARL 795 FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv F+ N++e++e+H+++++++++ +ee +++i+ +++++ + KIAA0380 796 FP-NLPELIEIHNSWCEAMKKLREE-----------GPIIKEISDLMLAR 833 FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk F+++ ++ee+ ++ +++cs ++ alel+k+ k++k ++Fq f++e+es+ KIAA0380 834 FDGP-AREELQQVAAQFCSYQSIALELIKT--KQRKESRFQLFMQEAESH 880 pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk p+cr rl+L +l+i +QRltkYpLLL+ ++kht+ + +++e+L++ KIAA0380 881 PQCR-----RLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCR 925 AleaikelasqvNe<-* A + ++e++++vNe KIAA0380 926 ARDQCREILKYVNE 939 SM00233: domain 1 of 1, from 983 to 1098: score 43.0, E = 3.9e-08 *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk............. +i+eG L+++ +k++ + ++ L ++ L++ ++ +++ + ++++ KIAA0380 983 MIHEGPLTWRIsKdKTLDLHVLLLEDLLVLLQKQdeklllkchskta 1029 ........kpkgsipLsgcsvre.p....cFeivt.dr.....tlllqAe ++++++++ ++++ L+ + +r + ++++F i+++++ ++++ ++l A KIAA0380 1030 vgssdskqTFSPVLKLNAVLIRSvAtdkrAFFIICtSKlgppqIYELVAL 1079 seeereeWvealqsaiaka<-* ++++++ W+e l++a+++a KIAA0380 1080 TSSDKNTWMELLEEAVRNA 1098 //