hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01195775/chunk_1/iprscan-20080502-01195775.nocrc
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Query sequence: KIAA0379
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00248 734.3 3.2e-216 28
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00248 1/28 13 42 .. 1 30 [] 5.0 1e+03
SM00248 2/28 46 75 .. 1 30 [] 29.6 0.00043
SM00248 3/28 79 108 .. 1 30 [] 26.1 0.0047
SM00248 4/28 112 141 .. 1 30 [] 23.7 0.027
SM00248 5/28 145 174 .. 1 30 [] 40.2 2.8e-07
SM00248 6/28 178 207 .. 1 30 [] 31.9 8.5e-05
SM00248 7/28 211 240 .. 1 30 [] 34.2 1.8e-05
SM00248 8/28 244 273 .. 1 30 [] 35.3 8.1e-06
SM00248 9/28 277 307 .. 1 30 [] 22.2 0.072
SM00248 10/28 311 340 .. 1 30 [] 19.0 0.67
SM00248 11/28 344 373 .. 1 30 [] 32.6 5.2e-05
SM00248 12/28 377 406 .. 1 30 [] 20.4 0.25
SM00248 13/28 410 439 .. 1 30 [] 38.1 1.2e-06
SM00248 14/28 443 472 .. 1 30 [] 30.1 0.00031
SM00248 15/28 476 506 .. 1 30 [] 24.6 0.014
SM00248 16/28 510 540 .. 1 30 [] 12.7 52
SM00248 17/28 555 584 .. 1 30 [] 20.5 0.24
SM00248 18/28 588 617 .. 1 30 [] 32.3 6.8e-05
SM00248 19/28 622 651 .. 1 30 [] 22.2 0.072
SM00248 20/28 658 687 .. 1 30 [] 33.9 2.2e-05
SM00248 21/28 691 720 .. 1 30 [] 25.4 0.0078
SM00248 22/28 724 753 .. 1 30 [] 25.0 0.011
SM00248 23/28 761 791 .. 1 30 [] 31.0 0.00016
SM00248 24/28 793 824 .. 1 30 [] 16.0 5.4
SM00248 25/28 828 857 .. 1 30 [] 35.4 7.5e-06
SM00248 26/28 861 891 .. 1 30 [] 23.5 0.03
SM00248 27/28 895 924 .. 1 30 [] 21.1 0.16
SM00248 28/28 931 960 .. 1 30 [] 22.3 0.069
Alignments of top-scoring domains:
SM00248: domain 1 of 28, from 13 to 42: score 5.0, E = 1e+03
*->dGrTpLHlAaengnlevvklLldkgadina<-*
++ L A+ ng+++ v++L+ k+ d+n
KIAA0379 13 RDQPSLVQAIFNGDPDEVRALIFKKEDVNF 42
SM00248: domain 2 of 28, from 46 to 75: score 29.6, E = 0.00043
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ rTpLH Aa+ g+ e+++lL+ +ga +na
KIAA0379 46 EKRTPLHAAAYLGDAEIIELLILSGARVNA 75
SM00248: domain 3 of 28, from 79 to 108: score 26.1, E = 0.0047
*->dGrTpLHlAaengnlevvklLldkgadina<-*
TpLH A+++ ++e v+ Ll+++ad+na
KIAA0379 79 KWLTPLHRAVASCSEEAVQVLLKHSADVNA 108
SM00248: domain 4 of 28, from 112 to 141: score 23.7, E = 0.027
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+ +TpLH+Aa+n+ ++++++L+ ++n+
KIAA0379 112 NWQTPLHIAAANKAVKCAEALVPLLSNVNV 141
SM00248: domain 5 of 28, from 145 to 174: score 40.2, E = 2.8e-07
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrT+LH+Aa +g+ e+vklLl++ga+ina
KIAA0379 145 AGRTALHHAAFSGHGEMVKLLLSRGANINA 174
SM00248: domain 6 of 28, from 178 to 207: score 31.9, E = 8.5e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+r ++H+Aa+ g++evvklL+++ga++++
KIAA0379 178 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTC 207
SM00248: domain 7 of 28, from 211 to 240: score 34.2, E = 1.8e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+TpLH Aa++g ++vvk+Lld g+d+n+
KIAA0379 211 KSYTPLHAAASSGMISVVKYLLDLGVDMNE 240
SM00248: domain 8 of 28, from 244 to 273: score 35.3, E = 8.1e-06
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+TpLH+A++ng+ vv++L+d ga +n
KIAA0379 244 YGNTPLHVACYNGQDVVVNELIDCGAIVNQ 273
SM00248: domain 9 of 28, from 277 to 307: score 22.2, E = 0.072
*->dGrTpLHlAaen.gnlevvklLldkgadina<-*
G+TpLH Aa+++ +++lL+ +gad+n+
KIAA0379 277 KGFTPLHFAAAStHGALCLELLVGNGADVNM 307
SM00248: domain 10 of 28, from 311 to 340: score 19.0, E = 0.67
*->dGrTpLHlAaengnlevvklLldkgadina<-*
dG+TpLH+ a +g+ + + ++++ga i++
KIAA0379 311 DGKTPLHMTALHGRFSRSQTIIQSGAVIDC 340
SM00248: domain 11 of 28, from 344 to 373: score 32.6, E = 5.2e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+TpLH+Aa++g++ +++ L+ +gad +
KIAA0379 344 NGNTPLHIAARYGHELLINTLITSGADTAK 373
SM00248: domain 12 of 28, from 377 to 406: score 20.4, E = 0.25
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+ pLHlAa +g ++++ Ll++g di+
KIAA0379 377 HGMFPLHLAALSGFSDCCRKLLSSGFDIDT 406
SM00248: domain 13 of 28, from 410 to 439: score 38.1, E = 1.2e-06
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrT+LH Aa+ gnle+++lLl+ gad+n+
KIAA0379 410 FGRTCLHAAAAGGNLECLNLLLNTGADFNK 439
SM00248: domain 14 of 28, from 443 to 472: score 30.1, E = 0.00031
*->dGrTpLHlAaengnlevvklLldkgadina<-*
Gr+pLH+Aa+n n+ ++ +L+ +ga++n+
KIAA0379 443 FGRSPLHYAAANCNYQCLFALVGSGASVND 472
SM00248: domain 15 of 28, from 476 to 506: score 24.6, E = 0.014
*->dGrTpLHlAaen.gnlevvklLldkgadina<-*
G+TpLH+Aa ++ + +++++Ll+++a++ +
KIAA0379 476 RGCTPLHYAATSdTDGKCLEYLLRNDANPGI 506
SM00248: domain 16 of 28, from 510 to 540: score 12.7, E = 52
*->dGrTpLHlAaengnlevvklLldkga.dina<-*
+G+++ H+ a++g+ +++l+ ++ + d+ +
KIAA0379 510 QGYNAVHYSAAYGHRLCLQLIASETPlDVLM 540
SM00248: domain 17 of 28, from 555 to 584: score 20.5, E = 0.24
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+pLHlAa++g++ ++ L+++ d+++
KIAA0379 555 ATISPLHLAAYHGHHQALEVLVQSLLDLDV 584
SM00248: domain 18 of 28, from 588 to 617: score 32.3, E = 6.8e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrTpL lAa +g++e+v L++ ga+i +
KIAA0379 588 SGRTPLDLAAFKGHVECVDVLINQGASILV 617
SM00248: domain 19 of 28, from 622 to 651: score 22.2, E = 0.072
*->dGrTpLHlAaengnlevvklLldkgadina<-*
rTp+H Aa ng+ e+++lL+ + na
KIAA0379 622 LKRTPIHAAATNGHSECLRLLIGNAEPQNA 651
SM00248: domain 20 of 28, from 658 to 687: score 33.9, E = 2.2e-05
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+G+TpL+l + ng+ ++v Ll+kga+++a
KIAA0379 658 NGQTPLMLSVLNGHTDCVYSLLNKGANVDA 687
SM00248: domain 21 of 28, from 691 to 720: score 25.4, E = 0.0078
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrT+LH a +g++e+v +Ll++ga + +
KIAA0379 691 WGRTALHRGAVTGHEECVDALLQHGAKCLL 720
SM00248: domain 22 of 28, from 724 to 753: score 25.0, E = 0.011
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrTp+Hl a+ g++ v+ +Ll++ a+++a
KIAA0379 724 RGRTPIHLSAACGHIGVLGALLQSAASMDA 753
SM00248: domain 23 of 28, from 761 to 791: score 31.0, E = 0.00016
*->dGrTpLHlAaengnlevvklLldkga.dina<-*
+G+T+LH+A++ng++ +v+lLl+ + ++
KIAA0379 761 HGYTALHWACYNGHETCVELLLEQEVfQKTE 791
SM00248: domain 24 of 28, from 793 to 824: score 16.0, E = 5.4
*->dGrTpLHlAaengnlevvklLldkga..dina<-*
+ ++pLH+A+ n+n+ +++L+d + + +na
KIAA0379 793 NAFSPLHCAVINDNEGAAEMLIDTLGasIVNA 824
SM00248: domain 25 of 28, from 828 to 857: score 35.4, E = 7.5e-06
*->dGrTpLHlAaengnlevvklLldkgadina<-*
GrTpLH Aa ++++e+++lLl+++a +n
KIAA0379 828 KGRTPLHAAAFTDHVECLQLLLSHNAQVNS 857
SM00248: domain 26 of 28, from 861 to 891: score 23.5, E = 0.03
*->dGrTpLHlAaengnlevvklLldkga.dina<-*
G+TpL++Aaeng+ ++v++L+++ ++++
KIAA0379 861 TGKTPLMMAAENGQTNTVEMLVSSASaELTL 891
SM00248: domain 27 of 28, from 895 to 924: score 21.1, E = 0.16
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+T+LHlA+++g++ + l+l+k d n+
KIAA0379 895 SKNTALHLACSKGHETSALLILEKITDRNL 924
SM00248: domain 28 of 28, from 931 to 960: score 22.3, E = 0.069
*->dGrTpLHlAaengnlevvklLldkgadina<-*
+TpLH+Aa+ng vv++Ll kga++ a
KIAA0379 931 ALQTPLHVAARNGLTMVVQELLGKGASVLA 960
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