hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01150101/chunk_1/iprscan-20080502-01150101.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0376 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00307.21.fs Calponin homology (CH) domain 26.4 1.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00307.21.fs 1/1 856 885 .] 1 39 [. 26.4 1.9e-06 Alignments of top-scoring domains: PF00307.21.fs: domain 1 of 1, from 856 to 885: score 26.4, E = 1.9e-06 *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwl<-* s +++ll+W++++++gy++ ++itnf+++w+ KIAA0376 856 SKRNALLKWCQKKTEGYQN---------IDITNFSSSWK 885 //