hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01081063/chunk_1/iprscan-20080502-01081063.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0372 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.fs Tetratricopeptide repeat 244.1 2.8e-70 17 PF07719.7.ls Tetratricopeptide repeat 242.0 1.2e-69 16 PF00515.18.ls Tetratricopeptide repeat 240.3 3.9e-69 14 PF07719.7.fs Tetratricopeptide repeat 232.0 1.2e-66 19 PF08238.2.fs Sel1 repeat 21.9 1.2e-05 4 PF07720.3.fs Tetratricopeptide repeat 20.3 7.9e-05 3 PF07720.3.ls Tetratricopeptide repeat 25.9 0.00013 3 PF08238.2.ls Sel1 repeat 25.7 0.00016 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/14 10 43 .. 1 34 [] 7.9 0.57 PF00515.18.fs 1/17 22 43 .. 13 34 .] 11.3 0.033 PF00515.18.ls 2/14 44 77 .. 1 34 [] 27.7 3.8e-05 PF07719.7.ls 2/16 44 77 .. 1 34 [] 26.0 0.00012 PF00515.18.fs 2/17 44 77 .. 1 34 [] 25.7 2.6e-06 PF00515.18.ls 4/14 310 343 .. 1 34 [] 19.0 0.016 PF00515.18.fs 4/17 310 343 .. 1 34 [] 17.0 0.0008 PF00515.18.fs 5/17 424 457 .. 1 34 [] 20.0 0.00011 PF00515.18.ls 5/14 424 457 .. 1 34 [] 22.0 0.0019 PF07719.7.ls 7/16 424 457 .. 1 34 [] 26.4 9.1e-05 PF08238.2.fs 2/4 458 494 .. 1 58 [] 14.2 0.002 PF08238.2.ls 1/4 458 494 .. 1 58 [] 15.9 0.14 PF08238.2.ls 2/4 497 529 .. 1 58 [] 6.4 2.4 PF07719.7.ls 10/16 568 601 .. 1 34 [] 26.1 0.00011 PF00515.18.fs 8/17 568 601 .. 1 34 [] 30.2 1.4e-07 PF00515.18.ls 8/14 568 601 .. 1 34 [] 32.2 1.7e-06 PF00515.18.fs 9/17 602 635 .. 1 34 [] 23.5 1.1e-05 PF00515.18.ls 9/14 602 635 .. 1 34 [] 25.5 0.00017 PF07720.3.ls 2/3 633 667 .. 1 38 [] 17.0 0.059 PF00515.18.ls 10/14 636 669 .. 1 34 [] 10.1 0.31 PF00515.18.fs 10/17 643 669 .. 8 34 .] 9.0 0.14 PF00515.18.fs 12/17 811 828 .. 17 34 .] 8.0 0.29 PF00515.18.ls 11/14 865 898 .. 1 34 [] 38.5 2.2e-08 PF00515.18.fs 13/17 865 898 .. 1 34 [] 36.5 2.2e-09 PF07719.7.ls 13/16 865 898 .. 1 34 [] 26.8 7e-05 PF00515.18.ls 12/14 984 1017 .. 1 34 [] 13.1 0.14 PF00515.18.fs 14/17 984 1017 .. 1 34 [] 11.1 0.037 PF07720.3.ls 3/3 1055 1089 .. 1 38 [] 6.0 1.8 PF00515.18.fs 16/17 1062 1088 .. 8 34 .] 8.4 0.22 PF00515.18.fs 17/17 1404 1437 .. 1 34 [] 21.5 4.1e-05 PF00515.18.ls 14/14 1404 1437 .. 1 34 [] 23.5 0.00071 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 14, from 10 to 43: score 7.9, E = 0.57 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++ + + ++y+eA+++++ +L+ + nn KIAA0372 10 VKTALKSARDAIRNKEYKEALKHCKTVLKQEKNN 43 PF00515.18.fs: domain 1 of 17, from 22 to 43: score 11.3, E = 0.033 *->klgkydeAieayekALeldPnn<-* + ++y+eA+++++ +L+ + nn KIAA0372 22 RNKEYKEALKHCKTVLKQEKNN 43 PF00515.18.ls: domain 2 of 14, from 44 to 77: score 27.7, E = 3.8e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++a+ +G+a +l+++d+A ay+kA el+P+ KIAA0372 44 YNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQ 77 PF07719.7.ls: domain 2 of 16, from 44 to 77: score 26.0, E = 0.00012 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ +G+a+++l+++++A ay+kA el+P+ KIAA0372 44 YNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQ 77 PF00515.18.fs: domain 2 of 17, from 44 to 77: score 25.7, E = 2.6e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++a+ +G+a +l+++d+A ay+kA el+P+ KIAA0372 44 YNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQ 77 PF00515.18.ls: domain 4 of 14, from 310 to 343: score 19.0, E = 0.016 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +y l+ a+ k+ +++eA+ + +AL++ n KIAA0372 310 TSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNL 343 PF00515.18.fs: domain 4 of 17, from 310 to 343: score 17.0, E = 0.0008 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +y l+ a+ k+ +++eA+ + +AL++ n KIAA0372 310 TSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNL 343 PF00515.18.fs: domain 5 of 17, from 424 to 457: score 20.0, E = 0.00011 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae++ +++++ +++y +A++++++ALe d + KIAA0372 424 AEVHALEALIHFTKKDYLQAEKCFQRALEKDTEV 457 PF00515.18.ls: domain 5 of 14, from 424 to 457: score 22.0, E = 0.0019 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae++ +++++ +++y +A++++++ALe d + KIAA0372 424 AEVHALEALIHFTKKDYLQAEKCFQRALEKDTEV 457 PF07719.7.ls: domain 7 of 16, from 424 to 457: score 26.4, E = 9.1e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae++ + +l+++ ++dy +A++++++Ale d + KIAA0372 424 AEVHALEALIHFTKKDYLQAEKCFQRALEKDTEV 457 PF08238.2.fs: domain 2 of 4, from 458 to 494: score 14.2, E = 0.002 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a+ y+LG y + G+ ++k D+ k A KIAA0372 458 AeYHYQLGL----TYW--FMGEE--------TRK------DKTK--A 482 lkwyekAAeqGn<-* l ++ kAA+++ KIAA0372 483 LTHFLKAARLDT 494 PF08238.2.ls: domain 1 of 4, from 458 to 494: score 15.9, E = 0.14 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA a+ y+LG y + G+ ++k D+ k A KIAA0372 458 AeYHYQLGL----TYW--FMGEE--------TRK------DKTK--A 482 lkwyekAAeqGn<-* l ++ kAA+++ KIAA0372 483 LTHFLKAARLDT 494 PF08238.2.ls: domain 2 of 4, from 497 to 529: score 6.4, E = 2.4 *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA + ++LG ++y++ G D+++ A KIAA0372 497 GkVFCYLG-------HYYRDVV------G-----------DKNR--A 517 lkwyekAAeqGn<-* + +y+kA e+++ KIAA0372 518 RGCYRKAFELDD 529 PF07719.7.ls: domain 10 of 16, from 568 to 601: score 26.1, E = 0.00011 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ ++Gl y+k+g++ +A++++++Al+ dP++ KIAA0372 568 KWAWLRRGLYYLKAGQHSQAVADLQAALRADPKD 601 PF00515.18.fs: domain 8 of 17, from 568 to 601: score 30.2, E = 1.4e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +a+ ++G+ ylk g++ +A+++++ AL+ dP++ KIAA0372 568 KWAWLRRGLYYLKAGQHSQAVADLQAALRADPKD 601 PF00515.18.ls: domain 8 of 14, from 568 to 601: score 32.2, E = 1.7e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +a+ ++G+ ylk g++ +A+++++ AL+ dP++ KIAA0372 568 KWAWLRRGLYYLKAGQHSQAVADLQAALRADPKD 601 PF00515.18.fs: domain 9 of 17, from 602 to 635: score 23.5, E = 1.1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++ lG ayl++g y A++ ++kA el+P+ KIAA0372 602 FNCWESLGEAYLSRGGYTTALKSFTKASELNPES 635 PF00515.18.ls: domain 9 of 14, from 602 to 635: score 25.5, E = 0.00017 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++ lG ayl++g y A++ ++kA el+P+ KIAA0372 602 FNCWESLGEAYLSRGGYTTALKSFTKASELNPES 635 PF07720.3.ls: domain 2 of 3, from 633 to 667: score 17.0, E = 0.059 *->leylyslWL.AavfynkgkyqeAeelfsYallaildken<-* +e +ys++ Aa ++ gky eA+ ++ i+ k+ KIAA0372 633 PESIYSVFKvAAIQQILGKYKEAVAQYQ----MIIKKKE 667 PF00515.18.ls: domain 10 of 14, from 636 to 669: score 10.1, E = 0.31 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + ++++ lgky+eA++ y+ ++ +++ KIAA0372 636 IYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDY 669 PF00515.18.fs: domain 10 of 17, from 643 to 669: score 9.0, E = 0.14 *->GnaylklgkydeAieayekALeldPnn<-* ++++ lgky+eA++ y+ ++ +++ KIAA0372 643 AAIQQILGKYKEAVAQYQMIIKKKEDY 669 PF00515.18.fs: domain 12 of 17, from 811 to 828: score 8.0, E = 0.29 *->ydeAieayekALeldPnn<-* +++ + +++kA++ld nn KIAA0372 811 LEKSLHCLKKAVRLDSNN 828 PF00515.18.ls: domain 11 of 14, from 865 to 898: score 38.5, E = 2.2e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a++nlG++yl ++ ++A ea++ A +ldP++ KIAA0372 865 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSY 898 PF00515.18.fs: domain 13 of 17, from 865 to 898: score 36.5, E = 2.2e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a++nlG++yl ++ ++A ea++ A +ldP++ KIAA0372 865 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSY 898 PF07719.7.ls: domain 13 of 16, from 865 to 898: score 26.8, E = 7e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a a+ nlG++y+ +++ e+A ea++ A +ldP++ KIAA0372 865 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSY 898 PF00515.18.ls: domain 12 of 14, from 984 to 1017: score 13.1, E = 0.14 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a++ lG++ ++l+ +eA ay++A+ l + KIAA0372 984 APAFTMLGYLNEHLQLKKEAANAYQRAILLLQTA 1017 PF00515.18.fs: domain 14 of 17, from 984 to 1017: score 11.1, E = 0.037 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a++ lG++ ++l+ +eA ay++A+ l + KIAA0372 984 APAFTMLGYLNEHLQLKKEAANAYQRAILLLQTA 1017 PF07720.3.ls: domain 3 of 3, from 1055 to 1089: score 6.0, E = 1.8 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* le++ ++ A ++++kg y e +++ + l i ++e KIAA0372 1055 LEDIIGF--ALALFMKGLYKESSKAYE-RALSIVESEQ 1089 PF00515.18.fs: domain 16 of 17, from 1062 to 1088: score 8.4, E = 0.22 *->GnaylklgkydeAieayekALeldPnn<-* ++a++ +g y+e +aye+AL++ ++ KIAA0372 1062 ALALFMKGLYKESSKAYERALSIVESE 1088 PF00515.18.fs: domain 17 of 17, from 1404 to 1437: score 21.5, E = 4.1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + a+ l+++y ++g +A+ +y+k L+l + KIAA0372 1404 VPAWQWLAHVYQSQGMMRAAEMCYRKSLQLASQR 1437 PF00515.18.ls: domain 14 of 14, from 1404 to 1437: score 23.5, E = 0.00071 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + a+ l+++y ++g +A+ +y+k L+l + KIAA0372 1404 VPAWQWLAHVYQSQGMMRAAEMCYRKSLQLASQR 1437 //