hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01031997/chunk_1/iprscan-20080502-01031997.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0369 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 362.3 3e-104 1 SM00537 293.3 1.8e-83 2 SM00219 11.7 7.3e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00537 1/2 117 208 .. 1 96 [] 160.3 2e-43 SM00537 2/2 246 334 .. 1 96 [] 133.0 3.2e-35 SM00219 1/1 455 710 .. 1 280 [] 11.7 7.3e-12 SM00220 1/1 455 712 .. 1 231 [] 362.3 3e-104 Alignments of top-scoring domains: SM00537: domain 1 of 2, from 117 to 208: score 160.3, E = 2e-43 *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv s++k+k++r+yRNGDr+fkG++++++++r f+SFeaLL dlT+ l+ KIAA0369 117 SEKKAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTR-TLS 161 vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg< ++++lp++VR++YT+dG kk+ sld+l++g ++YV+++ e +Fkk++Y+ KIAA0369 162 DNVNLPQGVRTIYTIDGLKKISSLDQLVEG-ESYVCGSIE-PFKKLEYT 208 -* KIAA0369 - - SM00537: domain 2 of 2, from 246 to 334: score 133.0, E = 3.2e-35 *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv ++ +pk ++++R+G++++k+vr+++n+k+ ++SFe++L+d+T+ + KIAA0369 246 DFIRPKLVTIIRSGVKPRKAVRILLNKKT-AHSFEQVLTDITD---A 288 vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg< +kld++ +V++lYTldG k+v +l++++++D++++a+g e kF++ d++ KIAA0369 289 IKLDSG-VVKRLYTLDG-KQVMCLQDFFGDDDIFIACGPE-KFRYQDDF 334 -* KIAA0369 - - SM00219: domain 1 of 1, from 455 to 710: score 11.7, E = 7.3e-12 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE + g+++G G+F +V +++ +++ +e A K +k+++ ++++ ++ +E KIAA0369 455 YKVGRTIGDGNFAVVKECVERstaREYALKIIKKSKcrgkEHMIQNE 501 akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL +i++++ kHpNiV L+ + l++vmE+++gGdL d + KIAA0369 502 VSILRRV--KHPNIVLLIEEMDVP-------TELYLVMELVKGGDLFDAI 542 rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk... ++ + + +d + + A+ YL+s n+vHRD+ N Lv e ++++ KIAA0369 543 TSTNK-YTERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVYEHQdgs 591 .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk + K +DFGL+ + d+ Y++ +g APE + KIAA0369 592 kSLKLGDFGLA-TIVDG-------PLYTV----CGTP----TYVAPEIIA 625 dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR + + k D+W+ GV + i+ G +P g + e ++ ++ G KIAA0369 626 ETGYGLKVDIWAAGVITY-ILLCGFPPFRG-SG--DDQEVLFDQILMGQV 671 lpkPendlpiSs...vtCPdelYdlMlqCWaedPedRPtFselverl<-* + ++ ++ +el ++Ml d ++R + ++ e KIAA0369 672 DFPSPY-----WdnvSDSAKELITMMLL---VDVDQRFSAVQVLEHP 710 SM00220: domain 1 of 1, from 455 to 712: score 362.3, E = 3e-104 *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE Y++++++G G F++V+ +++++t r++A+K+ik+++ ++++ +i++E KIAA0369 455 YKVGRTIGDGNFAVVKECVERSTAREYALKIIKkskcrgkeHMIQNE 501 ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg ++iL++ +HPNIV L++ ++ +++lylVmE++ G GdLfd + + ++ KIAA0369 502 VSILRRvKHPNIVLLIEEMDVpTELYLVMELVKG--GDLFDAITSTNK-- 547 lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......h ++E++a +++ ++sa++YLHs++I+HRD+KPeN+L+ +++++++ KIAA0369 548 ----YTErDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVYEhqdgskS 593 vKlaDFGlArql....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil +Kl+DFGlA++++++ +t++GTp Y+APE++ ++gYg +vDiW+ G+i KIAA0369 594 LKLGDFGLATIVdgplYTVCGTPTYVAPEIIaetGYGL-KVDIWAAGVIT 642 yElltGkpPFp....qldlifkkig..............SpeakdLikkl y+ll+G pPF++++++++++f++i+ + + +++++++ S++ak+Li + KIAA0369 643 YILLCGFPPFRgsgdDQEVLFDQILmgqvdfpspywdnvSDSAKELITMM 692 LvkdPekRlta.eaLedeldikaHPff<-* L +d ++R +a ++Le HP++ KIAA0369 693 LLVDVDQRFSAvQVLE-------HPWV 712 //