# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00141s1.fasta.huge -Q ../query/KIAA0367.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0367, 820 aa
 vs ./tmplib.23147 library

1986685 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.9196+/-0.00599; mu= 13.6492+/- 0.407
 mean_var=158.6749+/-37.513, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.101817

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1872  ( 434 res)   hj05518                     ( 434) 1004 159.5 7.2e-40


>>KIAA1872  ( 434 res)   hj05518                          (434 aa)
 initn: 1277 init1: 962 opt: 1004  Z-score: 807.7  bits: 159.5 E(): 7.2e-40
Smith-Waterman score: 1275;  61.587% identity (82.540% similar) in 315 aa overlap (494-795:85-399)

           470       480       490       500        510       520  
KIAA03 KNMISDTEMEEETEFLELGTRISRPNGLLSEDVGMDIPFEEGV-LSPSAADMRPEPPNSL
                                     ::.   .: : :: :  : ..    :::.:
KIAA18 SSQCLFPAPMGTTEATLRMENVDVKEEWQDEDLPRPLPEETGVELLGSPVEDTSSPPNTL
           60        70        80        90       100       110    

            530       540       550       560       570       580  
KIAA03 DLNDTHPRRIKLTAPNINLSLDQSEGSILSDDNLDSPDEIDINVDELDTPDEADSFEYTG
       ..: .: .:  :.::.::.::::::::.:::: ::.::..:::::...::::.::.:. :
KIAA18 NFNGAHRKRKTLVAPEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDSLEFLG
          120       130       140       150       160       170    

                      590       600       610        620       630 
KIAA03 H------ED--P--TANKDSGQESESIPEYTAEEEREDN-RLWRTVVIGEQEQRIDMKVI
       .      ::  :  ::..  :. .. . . :.:.    : ::::::.:::::.:::...:
KIAA18 NGNELEWEDDTPVATAKNMPGDSADLFGDGTTEDGSAANGRLWRTVIIGEQEHRIDLHMI
          180       190       200       210       220       230    

             640       650       660       670       680       690 
KIAA03 EPYRRVISHGGYYGDGLNAIIVFAACFLPDSSRADYHYVMENLFLYVISTLELMVAEDYM
       .:: .:..::::::.:::::::::::::::::  ::::.::::::::::.:::.::::::
KIAA18 RPYMKVVTHGGYYGEGLNAIIVFAACFLPDSSLPDYHYIMENLFLYVISSLELLVAEDYM
          240       250       260       270       280       290    

             700       710       720       730       740       750 
KIAA03 IVYLNGATPRRRMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAVTRPFISSK
       :::::::::::::::.::.:::::::::::::::::.:::::::::::.::..::::: :
KIAA18 IVYLNGATPRRRMPGIGWLKKCYQMIDRRLRKNLKSLIIVHPSWFIRTVLAISRPFISVK
          300       310       320       330       340       350    

             760       770       780        790       800       810
KIAA03 FSSKIKYVNSLSELSGLIPMDCIHIPESIIKLDEE-LREASEAAKTSCLYNDPEMSSMEK
       : .::.::.:: .:  ::::. ..::. ... .:: :.   :.:.               
KIAA18 FINKIQYVHSLEDLEQLIPMEHVQIPDCVLQYEEERLKARRESARPQPEFVLPRSEEKPE
          360       370       380       390       400       410    

              820          
KIAA03 DIDLKLKEKP          
                           
KIAA18 VAPVENRSALVSEDQETSMS
          420       430    




820 residues in 1 query   sequences
1986685 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:18:36 2008 done: Thu Dec 18 15:18:37 2008
 Total Scan time:  0.610 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]