hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00582727/chunk_1/iprscan-20080502-00582727.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0366 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 134.6 1.1e-35 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00209 1/4 550 602 .. 1 66 [] 68.3 9.7e-16 SM00209 2/4 844 901 .. 1 66 [] 7.1 1.8 SM00209 3/4 904 963 .. 1 66 [] 19.6 0.068 SM00209 4/4 965 1012 .. 1 66 [] 39.6 4.3e-07 Alignments of top-scoring domains: SM00209: domain 1 of 4, from 550 to 602: score 68.3, E = 9.7e-16 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w++W+ ++CS +tCG G vr RtR c++p p ngg KIAA0366 550 WGSWTKFGSCS-RTCGTG-----VRFRTR-----QCNNPMP--INGG 583 epCs....EtrpCntqpnLqpCp<-* ++C++ + E++ Cnt+ +C KIAA0366 584 QDCPgvnfEYQLCNTE----ECQ 602 SM00209: domain 2 of 4, from 844 to 901: score 7.1, E = 1.8 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ +WS+ S ++CGgG ++ + +c + +++ + KIAA0366 844 EWALKSWSQVS-KPCGGG-----FQYTKY----GCRRKSDNKM-VHR 879 epCs.......EtrpCntqpnLqpCp<-* + C+ ++++++ r Cn q +C KIAA0366 880 SFCEankkpkpIRRMCNIQ----ECT 901 SM00209: domain 3 of 4, from 904 to 963: score 19.6, E = 0.068 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + +eW C+ +tCG+ g + Rt + c p +g KIAA0366 904 LWVAEEWEHCT-KTCGSS----GYQLRTVR----CLQP-----LLDG 936 epCs............EtrpCntqpnLqpCp<-* + s +++ +++++ rpCn pCp KIAA0366 937 TNRSvhskycmgdrpeSRRPCNRV----PCP 963 SM00209: domain 4 of 4, from 965 to 1012: score 39.6, E = 4.3e-07 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + +++WS+CS vtCG+G + +R+ c++ g KIAA0366 965 QWKTGPWSECS-VTCGEG-----TEVRQV-----LCRA--------G 992 epCs.....EtrpCntqpnLqpCp<-* +C++++++ +r+C ++ pC KIAA0366 993 DHCDgekpeSVRACQLP----PCN 1012 //