hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00582727/chunk_1/iprscan-20080502-00582727.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0366 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05986.4.ls ADAM-TS Spacer 1 190.8 3.1e-54 1 PF05986.4.fs ADAM-TS Spacer 1 188.9 1.2e-53 1 PF00090.9.fs Thrombospondin type 1 domain 100.7 1.2e-29 4 PF00090.9.ls Thrombospondin type 1 domain 105.2 1.7e-28 4 PF01562.9.fs Reprolysin family propeptide 82.9 3.5e-22 2 PF01562.9.ls Reprolysin family propeptide 77.7 3.4e-20 1 PF01421.9.ls Reprolysin (M12B) family zinc metallo 6.6 1.5e-13 1 PF01421.9.fs Reprolysin (M12B) family zinc metallo 30.7 5.3e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01562.9.ls 1/1 3 197 .. 1 165 [] 77.7 3.4e-20 PF01562.9.fs 1/2 3 107 .. 1 93 [. 22.6 1e-05 PF01562.9.fs 2/2 132 197 .. 98 165 .] 60.2 5.4e-16 PF01421.9.ls 1/1 254 456 .. 1 203 [] 6.6 1.5e-13 PF01421.9.fs 1/2 336 406 .. 78 150 .. 29.9 8.5e-08 PF00090.9.ls 1/4 551 601 .. 1 55 [] 45.6 1.6e-10 PF00090.9.fs 1/4 551 601 .. 1 55 [] 43.7 1.7e-12 PF05986.4.fs 1/1 709 823 .. 1 128 [] 188.9 1.2e-53 PF05986.4.ls 1/1 709 823 .. 1 128 [] 190.8 3.1e-54 PF00090.9.ls 2/4 843 900 .. 1 55 [] 4.3 0.018 PF00090.9.ls 3/4 905 962 .. 1 55 [] 13.8 0.0013 PF00090.9.fs 4/4 966 1011 .. 1 55 [] 39.7 2.6e-11 PF00090.9.ls 4/4 966 1011 .. 1 55 [] 41.5 2.6e-09 Alignments of top-scoring domains: PF01562.9.ls: domain 1 of 1, from 3 to 197: score 77.7, E = 3.4e-20 *->lLlllllpglaglg.aalgtp.w........eyssyEvviPekltse +L+++ l+ + ++ ++ +g+ + + + + ++y yE+v+P e KIAA0366 3 WLIAAALVEVRTSAdGQAGNEeMvqidlpikRYREYELVTPVSTNLE 49 gkrrvkqdldirlkslkeekye...eelsYvlrieGkpyiLhLeknrgll g+ l ++k+ +++++ +++e+l ++++++Gk+++L+L++n +l+ KIAA0366 50 GRYL-SHTLSASHKKRSARDVSsnpEQLFFNITAFGKDFHLRLKPNTQLV 98 apdftvttYded....................GtlvteepliqdhCyYqG ap+ +v ++ + +++ +++ +++++++ + +++te+++ ++C Y G KIAA0366 99 APGAVVEWHETSlvpgnitdpinnhqpgsatyRIRKTEPLQ--TNCAYVG 146 yVeGypnSaVslSTCsGGLRGllqlenvsYgIEPle.sssgfeAQ.rlPH + ++p+ +V++S C+ GL G+++ +n++Y+IEPle++ + +e +r+ H KIAA0366 147 DIVDIPGTSVAISNCD-GLAGMIKSDNEEYFIEPLErGKQMEEEKgRI-H 194 iiY<-* ++Y KIAA0366 195 VVY 197 PF01562.9.fs: domain 1 of 2, from 3 to 107: score 22.6, E = 1e-05 *->lLlllllpglaglg.aalgtp.w........eyssyEvviPekltse +L+++ l+ + ++ ++ +g+ + + + + ++y yE+v+P e KIAA0366 3 WLIAAALVEVRTSAdGQAGNEeMvqidlpikRYREYELVTPVSTNLE 49 gkrrvkqdldirlkslkeekye...eelsYvlrieGkpyiLhLeknrgll g+ l ++k+ +++++ +++e+l ++++++Gk+++L+L++n +l+ KIAA0366 50 GRYL-SHTLSASHKKRSARDVSsnpEQLFFNITAFGKDFHLRLKPNTQLV 98 apdftvttY<-* ap+ +v ++ KIAA0366 99 APGAVVEWH 107 PF01562.9.fs: domain 2 of 2, from 132 to 197: score 60.2, E = 5.4e-16 *->tlvteepliqdhCyYqGyVeGypnSaVslSTCsGGLRGllqlenvsY +++te+++ ++C Y G + ++p+ +V++S C+ GL G+++ +n++Y KIAA0366 132 IRKTEPLQ--TNCAYVGDIVDIPGTSVAISNCD-GLAGMIKSDNEEY 175 gIEPle.sssgfeAQ.rlPHiiY<-* +IEPle++ + +e +r+ H++Y KIAA0366 176 FIEPLErGKQMEEEKgRI-HVVY 197 PF01421.9.ls: domain 1 of 1, from 254 to 456: score 6.6, E = 1.5e-13 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrpq...LN iE+ + vD +++ +g +++ ++ + ++N+vNeiY +++ + + KIAA0366 254 --IEVLLGVDDSVVRFHG--KEHVQNYLLTLMNIVNEIYHDEslgVH 296 IrVvLvgLEIWsdgDkInvq..sdandTLhsFgeW....RetdLlkrksH I VvLv + I++ ++++++ L++ +W ++++++dL + H KIAA0366 297 INVVLVRMIMLGYAKSISLIerGNPSRSLENVCRWasqqQRSDLNHSEHH 346 DnAqLLtgidf..dgntiGaAyvggmCspkrSvGVv.qdhspivllvAvt D+A+ Lt df++ g ++G A+v gmC+p rS+ +++d+ ++ A + KIAA0366 347 DHAIFLTRQDFgpAG-MQGYAPVTGMCHPVRSCTLNhEDG----FSSAFV 391 MAHELGHNLGmtHDdkntdgCtCe..gggsCIMnpvassspskKk.FSnC +AHE GH LGm+HD+ + C+++ + + +M+p + + +++ S+C KIAA0366 392 VAHETGHVLGMEHDGQGN---RCGdeTAMGSVMAP-LVQAAFHRYhWSRC 437 SkddyqkFltkqkpqCLlNkP<-* S ++++++++++ CLl+ P KIAA0366 438 SGQELKRYIHSYD--CLLDDP 456 PF01421.9.fs: domain 1 of 2, from 336 to 406: score 29.9, E = 8.5e-08 *->RetdLlkrksHDnAqLLtgidf..dgntiGaAyvggmCspkrSvGVv +++dL + HD+A+ Lt df++ g ++G A+v gmC+p rS+ + KIAA0366 336 QRSDLNHSEHHDHAIFLTRQDFgpAG-MQGYAPVTGMCHPVRSCTLN 381 .qdhspivllvAvtMAHELGHNLGmtHDd<-* ++d+ ++ A ++AHE GH LGm+HD+ KIAA0366 382 hEDG----FSSAFVVAHETGHVLGMEHDG 406 PF00090.9.ls: domain 1 of 4, from 551 to 601: score 45.6, E = 1.6e-10 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W+ +CS TCG G+r R+R cn+p P gg++C+g e + KIAA0366 551 GSWTKFGSCSRTCGTGVRFRTRQCNNPMPI-NGGQDCPGVNFE--YQ 594 aCdmmdkC<-* C + ++C KIAA0366 595 LC-NTEEC 601 PF00090.9.fs: domain 1 of 4, from 551 to 601: score 43.7, E = 1.7e-12 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + W+ +CS TCG G+r R+R cn+p P gg++C+g e + KIAA0366 551 GSWTKFGSCSRTCGTGVRFRTRQCNNPMPI-NGGQDCPGVNFE--YQ 594 aCdmmdkC<-* C + ++C KIAA0366 595 LC-NTEEC 601 PF05986.4.fs: domain 1 of 1, from 709 to 823: score 188.9, E = 1.2e-53 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA +tvkGtFt+++++ GY++++ IP GArh lI+E ++S+ + LA KIAA0366 709 RTVKGTFTRTPRKLGYLKMFDIPPGARHVLIQEDEASP-----HILA 750 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +kn++TG+ yiLNG++ +a +rtf G++++Y +dd +EsL+ KIAA0366 751 IKNQATGH-YILNGKGE-EAKSRTFIDLGVEWDYNI-EDD-----IESLH 792 atGPtnepLivqvLfqggapnpgikYeYtiP<-* + GP+++p+iv++++q+++++++++Y+Y i+ KIAA0366 793 TDGPLHDPVIVLIIPQENDTRSSLTYKYIIH 823 PF05986.4.ls: domain 1 of 1, from 709 to 823: score 190.8, E = 3.1e-54 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA +tvkGtFt+++++ GY++++ IP GArh lI+E ++S+ + LA KIAA0366 709 RTVKGTFTRTPRKLGYLKMFDIPPGARHVLIQEDEASP-----HILA 750 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt +kn++TG+ yiLNG++ +a +rtf G++++Y +dd +EsL+ KIAA0366 751 IKNQATGH-YILNGKGE-EAKSRTFIDLGVEWDYNI-EDD-----IESLH 792 atGPtnepLivqvLfqggapnpgikYeYtiP<-* + GP+++p+iv++++q+++++++++Y+Y i+ KIAA0366 793 TDGPLHDPVIVLIIPQENDTRSSLTYKYIIH 823 PF00090.9.ls: domain 2 of 4, from 843 to 900: score 4.3, E = 0.018 *->spWse..WSpCSVTCGkGir.....tRqRvcnspaPqkkggepCtgd +W ++WS+ S++CG+G + ++ + R++++n+++ ++C+ + KIAA0366 843 FEWALksWSQVSKPCGGGFQytkygCRRKSDNKMV----HRSFCEAN 885 vqe.leteaCdmmdkC<-* + ++ ++C + ++C KIAA0366 886 KKPkPIRRMC-NIQEC 900 PF00090.9.ls: domain 3 of 4, from 905 to 962: score 13.8, E = 0.0013 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggep.......Ctg + +eW+ C++TCG++G + R+ +c +p +g +++ +++ C+g KIAA0366 905 WVAEEWEHCTKTCGsSGYQLRTVRCLQPL---LDGTNrsvhskyCMG 948 dvqeleteaCdmmdkC<-* d e ++C + +C KIAA0366 949 DRPE-SRRPC-NRVPC 962 PF00090.9.fs: domain 4 of 4, from 966 to 1011: score 39.7, E = 2.6e-11 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +++WS+CSVTCG+G+ +Rq +c + g +C g++ e ++ KIAA0366 966 WKTGPWSECSVTCGEGTEVRQVLCRA-------GDHCDGEKPE-SVR 1004 aCdmmdkC<-* aC ++C KIAA0366 1005 AC-QLPPC 1011 PF00090.9.ls: domain 4 of 4, from 966 to 1011: score 41.5, E = 2.6e-09 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete +++WS+CSVTCG+G+ +Rq +c + g +C g++ e ++ KIAA0366 966 WKTGPWSECSVTCGEGTEVRQVLCRA-------GDHCDGEKPE-SVR 1004 aCdmmdkC<-* aC ++C KIAA0366 1005 AC-QLPPC 1011 //