hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00564456/chunk_1/iprscan-20080502-00564456.nocrc
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Query sequence: KIAA0365
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00648                                                 109.2    4.7e-28   2
SM00443                                                  69.6    3.8e-16   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00648     1/2     686   738 ..     1    54 []    38.5    9e-07
SM00648     2/2     884   938 ..     1    54 []    70.7  1.8e-16
SM00443     1/1    1108  1154 ..     1    48 []    69.6  3.8e-16

Alignments of top-scoring domains:
SM00648: domain 1 of 2, from 686 to 738: score 38.5, E = 9e-07
                   *->ldiIdktAqFVarnGp.eFEaklmekeknNpqFdFLkp.ndpyhaYY
                        +Id +++ V+ + ++  E++l+++   +p ++FL ++n+ +++YY
    KIAA0365   686    VGTIDQLVKRVIEGSLsPKERTLLKE---DPAYWFLSDeNSLEYKYY 729  

                   rkklaeyse<-*
                   + klae+++   
    KIAA0365   730 KLKLAEMQR    738  

SM00648: domain 2 of 2, from 884 to 938: score 70.7, E = 1.8e-16
                   *->ldiIdktAqFVarnGpeFEaklmekeknNpqFdFLkp.ndpyhaYYr
                      +++ +k+A+FVa+ Gpe+E+  +e+ ++Np  +FL+++n++ +++Yr
    KIAA0365   884    METAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDqNSSAFKFYR 930  

                   kklaeyse<-*
                   kk++e +    
    KIAA0365   931 KKVFELCP    938  

SM00443: domain 1 of 1, from 1108 to 1154: score 69.6, E = 3.8e-16
                   *->istsniGaklLekMGWkeGkGLGkneqGivePIeakikkkdrkGLGa
                      +  +n G+++L+kMGWkeG GLG+ ++Gi+eP++++     ++GLGa
    KIAA0365  1108    LTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTP-SEGEGLGA 1153 

                   v<-*
                   +   
    KIAA0365  1154 D    1154 

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