hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00500093/chunk_1/iprscan-20080502-00500093.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0361 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02769.12.ls AIR synthase related protein, C-terminal dom 204.8 1.9e-58 2 PF02769.12.fs AIR synthase related protein, C-terminal dom 201.2 2.3e-57 2 PF00586.14.fs AIR synthase related protein, N-terminal dom 102.5 2e-28 1 PF00586.14.ls AIR synthase related protein, N-terminal dom 89.5 9.3e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00586.14.ls 1/1 292 467 .. 1 191 [] 89.5 9.3e-24 PF00586.14.fs 1/1 335 467 .. 58 191 .] 102.5 2e-28 PF02769.12.fs 1/2 477 636 .. 1 193 [] 108.0 2.6e-29 PF02769.12.ls 1/2 477 636 .. 1 193 [] 109.8 7.3e-30 PF02769.12.ls 2/2 880 1025 .. 1 193 [] 95.0 2.1e-25 PF02769.12.fs 2/2 880 1025 .. 1 193 [] 93.2 7.3e-25 Alignments of top-scoring domains: PF00586.14.ls: domain 1 of 1, from 292 to 467: score 89.5, E = 9.3e-24 *->dsltyksagvdgdagkslvqlikelykstrrpgvisgtlvapGgdag s++ ++ + d++++++++ +++ + +t p KIAA0361 292 ESSNPNNVLKFCDNSSAIQGKEVRFLRPED------PTR--PS---- 326 vidlkdlyedpgLvfttDghGTKLviapsavdpytgGadaVagtvnDlaa ++ + + +++vft+++h + p+ v p+ g+ ++++g ++D+ + KIAA0361 327 --RFQQQQGLRHVVFTAETH-----NFPTGVCPFSGATTGTGGRIRDVQC 369 mGrGAePlalldylafGegldpevlqPwE..dfg.P.hia.arivkeeav +GrGA +a++++++fG++++p++ +PwE+ f P+ +a+ + v++ea KIAA0361 370 TGRGAHVVAGTAGYCFGNLHIPGYNLPWEdlSFQyPgNFArPLEVAIEAS 419 kGiadgcneaGvplvGGYfr.leTavmpgtlneydgvfpdlaggcvGive +G +d++n++G p+++G++r+l + g+ ++ ++p++ g++G +e KIAA0361 420 NGASDYGNKFGEPVLAGFARsLGLQLPDGQR--REWIKPIMFSGGIGSME 467 <-* KIAA0361 - - PF00586.14.fs: domain 1 of 1, from 335 to 467: score 102.5, E = 2e-28 *->pgLvfttDghGTKLviapsavdpytgGadaVagtvnDlaamGrGAeP +++vft+++h + p+ v p+ g+ ++++g ++D+ ++GrGA KIAA0361 335 RHVVFTAETH-----NFPTGVCPFSGATTGTGGRIRDVQCTGRGAHV 376 lalldylafGegldpevlqPwE..dfg.P.hia.arivkeeavkGiadgc +a++++++fG++++p++ +PwE+ f P+ +a+ + v++ea +G +d++ KIAA0361 377 VAGTAGYCFGNLHIPGYNLPWEdlSFQyPgNFArPLEVAIEASNGASDYG 426 neaGvplvGGYfr.leTavmpgtlneydgvfpdlaggcvGive<-* n++G p+++G++r+l + g+ ++ ++p++ g++G +e KIAA0361 427 NKFGEPVLAGFARsLGLQLPDGQR--REWIKPIMFSGGIGSME 467 PF02769.12.fs: domain 1 of 2, from 477 to 636: score 108.0, E = 2.6e-29 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdeperp +pG ++ +g+ +++r+G++G++ s+v +++ + +d ++ KIAA0361 477 EPGMEVVKVGG---PVYRIGVGGGAASSVQVQGDNTSDLD-----FG 515 avqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaEm avq +gdp++e+++ +v+++++++ + g++++++hD ++GG ++l E+ KIAA0361 516 AVQ--RGDPEMEQKMNRVIRACVEAPK-GNPICSLHDQGAGGNGNVLKEL 562 apagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqGr + Ga i+ + + ++ ++ +++le++ +e+q+ KIAA0361 563 SDP---AGAIIYTS--------RFQLGDPT------LNALEIWGAEYQES 595 glvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +++++++ + + + ++e++ + a+ +G++t+++++++v++ KIAA0361 596 NALLLRSPNR-DFLTHVSARERC--P--ACFVGTITGDRRIVLVDD 636 PF02769.12.ls: domain 1 of 2, from 477 to 636: score 109.8, E = 7.3e-30 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdeperp +pG ++ +g+ +++r+G++G++ s+v +++ + +d ++ KIAA0361 477 EPGMEVVKVGG---PVYRIGVGGGAASSVQVQGDNTSDLD-----FG 515 avqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaEm avq +gdp++e+++ +v+++++++ + g++++++hD ++GG ++l E+ KIAA0361 516 AVQ--RGDPEMEQKMNRVIRACVEAPK-GNPICSLHDQGAGGNGNVLKEL 562 apagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqGr + Ga i+ + + ++ ++ +++le++ +e+q+ KIAA0361 563 SDP---AGAIIYTS--------RFQLGDPT------LNALEIWGAEYQES 595 glvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +++++++ + + + ++e++ + a+ +G++t+++++++v++ KIAA0361 596 NALLLRSPNR-DFLTHVSARERC--P--ACFVGTITGDRRIVLVDD 636 PF02769.12.ls: domain 2 of 2, from 880 to 1025: score 95.0, E = 2.1e-25 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdeperp + G +l++ s+ G+++l+G++ +++ + + +++p KIAA0361 880 GRGHLLYVALSP----GQHRLGGTA-LAQCFSQLGEHPP-------- 913 avqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaEm + l+ p+ + + + + l + l +++hD+++GGL+ +l Em KIAA0361 914 --D--LDLPENLVRAFSITQGLLKD----RLLCSGHDVSDGGLVTCLLEM 955 apagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqGr a+a +++G+++d++ vp ++ l lf+e++G KIAA0361 956 AFA-GNCGLQVDVP---------VPRVDVLS----------VLFAEEPGL 985 glvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +l+v +p+ a +vl++ +++gl + + ++G++++ g + +v + KIAA0361 986 VLEVQEPDLA--QVLKRYRDAGL--H--CLELGHTGEAGPHAMVRV 1025 PF02769.12.fs: domain 2 of 2, from 880 to 1025: score 93.2, E = 7.3e-25 *->kpGDvlillgsttkktGrsGlhGnglslvrklleesglpdsdeperp + G +l++ s+ G+++l+G++ +++ + + +++p KIAA0361 880 GRGHLLYVALSP----GQHRLGGTA-LAQCFSQLGEHPP-------- 913 avqitlgdplleptliyvvlllaalgetgglvkamhDitgGGLagalaEm + l+ p+ + + + + l + l +++hD+++GGL+ +l Em KIAA0361 914 --D--LDLPENLVRAFSITQGLLKD----RLLCSGHDVSDGGLVTCLLEM 955 apagsglGaeidldrsaIPvweevpvfeelmkaGnrvlglemlfsenqGr a+a +++G+++d++ vp ++ l lf+e++G KIAA0361 956 AFA-GNCGLQVDVP---------VPRVDVLS----------VLFAEEPGL 985 glvvvvpeeaveevlailekeglpsgkeaavIGeVtaggglevvvk<-* +l+v +p+ a +vl++ +++gl + + ++G++++ g + +v + KIAA0361 986 VLEVQEPDLA--QVLKRYRDAGL--H--CLELGHTGEAGPHAMVRV 1025 //