hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00464696/chunk_1/iprscan-20080502-00464696.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0359
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 633.4   7.6e-186   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      20   361 ..     1   404 []   633.4 7.6e-186

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 20 to 361: score 633.4, E = 7.6e-186
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                       +++rV+vR+   RP n++Ek+       + vv+v+ + ++v+v ++
    KIAA0359    20    SESVRVVVRC---RPMNGKEKAAS----YDKVVDVdvklgQVSVKnp 59   

                   ..........FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNv
                   +++ ++ +++FtFD V+      d++a Q + ++e+ +PLvds+l+G+N+
    KIAA0359    60 kgtahempktFTFDAVY------DWNAKQFELYDETFRPLVDSVLQGFNG 103  

                   aTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledlF
                    TIFAYGQTG+GKTyTM+G+             ++p+ +G+IP +++++F
    KIAA0359   104 -TIFAYGQTGTGKTYTMEGIR------------GDPEKRGVIPNSFDHIF 140  

                   ekide.....fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkk
                   ++i ++++++++V++SylEIY+E+irDLLs++++              k+
    KIAA0359   141 THISRsqnqqYLVRASYLEIYQEEIRDLLSKDQT--------------KR 176  

                   LrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGn
                   L+++E ++                gvyV++L+ ++ +S+ e+++++++Gn
    KIAA0359   177 LELKERPD---------------TGVYVKDLSSFVTKSVKEIEHVMNVGN 211  

                   knRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegteqi
                   +nR+v+aT+mNe+SSRSHaiF it+e  e++             +g+  i
    KIAA0359   212 QNRSVGATNMNEHSSRSHAIFVITIECSEVG------------LDGENHI 249  

                   ksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALad
                   +++kLnLVDLAGSER++kTg  a G+RLkEa++IN+SL+aLGnVI+AL+d
    KIAA0359   250 RVGKLNLVDLAGSERQAKTG--AQGERLKEATKINLSLSALGNVISALVD 297  

                   dshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSP
                                  gks+HIPYRDSKLTrLLQdSLGGN+KT+M+anv P
    KIAA0359   298 ---------------GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGP 332  

                   sssnyeETlsTLrFAsRaksIknkpavne<-*
                   +s+n+eETl+TLr+A+Rak+Iknkp vne   
    KIAA0359   333 ASYNVEETLTTLRYANRAKNIKNKPRVNE    361  

//