hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00423483/chunk_1/iprscan-20080502-00423483.nocrc
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Query sequence: KIAA0357
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  28.9    0.00068   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/4     447   583 ..     1    92 []     8.6      3.2
SM00382    2/4     725   857 ..     1    92 []     5.7      6.2
SM00382    3/4    1052  1203 ..     1    92 []    14.3     0.85
SM00382    4/4    1399  1502 ..     1    92 []     0.3       21

Alignments of top-scoring domains:
SM00382: domain 1 of 4, from 447 to 583: score 8.6, E = 3.2
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...ggqrir.l
                      +g +    Gp G+GKT + + l r lg  v++++++++   +   ++
    KIAA0357   447    SGAPA---GPAGTGKTETTKDLGRALGILVYVFNCSeqmDYKSCGnI 490  

                   alalark.dvlllDEitslld.............................
                    + la+ +    +DE +++  + ++    + ++ ++  +++++  + +++
    KIAA0357   491 YKGLAQTgAWGCFDEFNRISVevlsvvavqvksiqdairdkkqwfsflge 540  

                   .......vtviattn......dldpallrr.rfdrrivllril<-*
                   + +++ +v +++t+n++  +++++p +l++    + +v+++ +   
    KIAA0357   541 eislnpsVGIFITMNpgyagrTELPENLKSlFRPCAMVVPDFE    583  

SM00382: domain 2 of 4, from 725 to 857: score 5.7, E = 6.2
                   *->pgevvllvGppGsGKTTlaralarllgp...gviyidge........
                        ++v++vG  G+GK+ ++r l++ ++  +++ +  d++ +   +++
    KIAA0357   725    VRHSVFVVGGAGTGKSQVLRSLHKTYQImkrRPVWTDLNpkavtnde 771  

                   ............ggqrir.lalalark..............dvlllDEit
                     +  +   ++ +   + +++++la+ ++++++    +++ d +++  ++
    KIAA0357   772 lfgiinpatgewKDGLFSsIMRELANTthdgpkwilldgdiDPMWIESLN 821  

                   slld.vtviattn.dldpallrr.rfdrrivllril<-*
                   +  d+  v+  + ++ +p++  ++ + ++ +l++ +   
    KIAA0357   822 TVMDdNKVLTLASnERIPLNPTMkLLFEISHLRTAT    857  

SM00382: domain 3 of 4, from 1052 to 1203: score 14.3, E = 0.85
                   *->pgevvllvGppGsGKTTlaralarllgp.gviyidge.....ggqri
                      + ++v+lvG  G+GK++l+ a +  l+p+ +++ + + +     +++
    KIAA0357  1052    RQRPVMLVGTAGTGKSVLVGAKLASLDPeAYLVKNVPfnyytTSAML 1098 

                   rlalalark..............dvlllDEitslld..............
                   + +l++  +++ +++ +++++++ ++++D++++   +  +  + +   ++
    KIAA0357  1099 QAVLEKPLEkkagrnygppgnkkLIYFIDDMNMPEVdaygtvqphtiirq 1148 

                   ....................vtviattn......dldpallrrrfdrriv
                   +++ ++  +++++++++  +v+ +  +n++ ++ ++ p+l r+ + +++ 
    KIAA0357  1149 hldyghwydrsklslkeitnVQYVSCMNptagsfTINPRLQRHFSVFVLS 1198 

                   llril<-*
                   ++  +   
    KIAA0357  1199 FPGAD    1203 

SM00382: domain 4 of 4, from 1399 to 1502: score 0.3, E = 21
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...ggqrir.l
                      p ++ llvG  GsGK  l r+ a  +  +v+ i++ ++ ++q ++ +
    KIAA0357  1399    PRGNALLVGVGGSGKQSLTRLAAFISSMDVFQITLRkgyQIQDFKmD 1445 

                   alalark.......dvlllDEitslldvtviattn.dldpallrrrfdrr
                   +  l+ k + ++ + v l+ +++ +  + +++++     + +  + +d++
    KIAA0357  1446 LASLCLKagvknlnTVFLMTDAQVADERFLVLINDlLASGEIPDLYSDDE 1495 

                   ivllril<-*
                   ++   ++   
    KIAA0357  1496 VENIISN    1502 

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