hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00423483/chunk_1/iprscan-20080502-00423483.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0357 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.fs Dynein heavy chain 1338.9 0 2 PF03028.6.ls Dynein heavy chain 1256.8 0 1 PF08393.3.fs Dynein heavy chain, N-terminal region 2 490.5 6.6e-146 1 PF08393.3.ls Dynein heavy chain, N-terminal region 2 305.2 1.1e-88 1 PF07728.4.fs ATPase family associated with various ce 73.1 4.3e-21 6 PF07728.4.ls ATPase family associated with various ce 59.7 9e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08393.3.fs 1/1 1 285 [. 141 427 .] 490.5 6.6e-146 PF08393.3.ls 1/1 1 285 [. 1 427 [] 305.2 1.1e-88 PF07728.4.ls 1/2 728 872 .. 1 184 [] 57.6 3.8e-14 PF07728.4.fs 4/6 728 872 .. 1 184 [] 55.9 4.6e-16 PF03028.6.fs 1/2 2364 2542 .. 1 198 [. 351.6 3.1e-106 PF03028.6.ls 1/1 2364 2991 .. 1 783 [] 1256.8 0 PF03028.6.fs 2/2 2543 2991 .. 280 783 .] 987.3 1.4e-297 Alignments of top-scoring domains: PF08393.3.fs: domain 1 of 1, from 1 to 285: score 490.5, E = 6.6e-146 *->eikdIvdqAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkG e++ Ivd+A kE+ +Ek Lke+ +tW+++eF+++p+ +t ++ll KIAA0357 1 EVRGIVDKAAKEMGMEKTLKELQTTWAGMEFQYEPHPRTN-VPLLC- 45 gwdelfekLeDnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWl + ++l+e LeDnqv+Lq++ +S+y+++F++e+s+W+kKLs++d+++ iW+ KIAA0357 46 SDEDLIEVLEDNQVQLQNLVMSKYVAFFLEEVSGWQKKLSTVDAVISIWF 95 eVQrkWvYLEgIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnV eVQr+W +LE+IF gSeDIr+QLP+++kRF++ID +f+++ +++k pnV KIAA0357 96 EVQRTWTHLESIFTGSEDIRAQLPQDSKRFEGIDIDFKELAYDAQKIPNV 145 ldvcnipglleslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDL ++ +n pgl+e+ Le+++ +L +c+KaL eYL+tKRlaFPRFYFlS+ DL KIAA0357 146 VQTTNKPGLYEK-LEDIQGRLCLCEKALAEYLDTKRLAFPRFYFLSSSDL 194 LEILGnskdPtrvQkHLkKlFdgIasLefdedgkd...ktIvgmvSkEGE L+IL+n++ P++vQ+HL KlFd++a+ +f+ d +++++kt +gm+SkE E KIAA0357 195 LDILSNGTAPQQVQRHLSKLFDNMAKMRFQLDASGeptKTSLGMYSKEEE 244 eVpfsnpvsiegappVEeWLneLedeMkaTLkellreaveayr<-* +V+fs+p++++g +VE+WLn++ +MkaT+++ + e+v+ay+ KIAA0357 245 YVAFSEPCDCSG--QVEIWLNHVLGHMKATVRHEMTEGVTAYE 285 PF08393.3.ls: domain 1 of 1, from 1 to 285: score 305.2, E = 1.1e-88 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee KIAA0357 - ----------------------------------------------- - ldkllkqlrkLpkevrqyeakeafeklkqkiknfkkslpllqeLknpamk KIAA0357 - -------------------------------------------------- - eRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIvd e++ Ivd KIAA0357 1 -------------------------------------------EVRGIVD 7 qAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkGgwdelfekLe +A kE+ +Ek Lke+ +tW+++eF+++p+ +t ++ll + ++l+e Le KIAA0357 8 KAAKEMGMEKTLKELQTTWAGMEFQYEPHPRTN-VPLLC-SDEDLIEVLE 55 DnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWvYLE Dnqv+Lq++ +S+y+++F++e+s+W+kKLs++d+++ iW+eVQr+W +LE KIAA0357 56 DNQVQLQNLVMSKYVAFFLEEVSGWQKKLSTVDAVISIWFEVQRTWTHLE 105 gIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnipgll +IF gSeDIr+QLP+++kRF++ID +f+++ +++k pnV++ +n pgl+ KIAA0357 106 SIFTGSEDIRAQLPQDSKRFEGIDIDFKELAYDAQKIPNVVQTTNKPGLY 155 eslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskdP e+ Le+++ +L +c+KaL eYL+tKRlaFPRFYFlS+ DLL+IL+n++ P KIAA0357 156 EK-LEDIQGRLCLCEKALAEYLDTKRLAFPRFYFLSSSDLLDILSNGTAP 204 trvQkHLkKlFdgIasLefdedgkd...ktIvgmvSkEGEeVpfsnpvsi ++vQ+HL KlFd++a+ +f+ d +++++kt +gm+SkE E+V+fs+p+++ KIAA0357 205 QQVQRHLSKLFDNMAKMRFQLDASGeptKTSLGMYSKEEEYVAFSEPCDC 254 egappVEeWLneLedeMkaTLkellreaveayr<-* +g +VE+WLn++ +MkaT+++ + e+v+ay+ KIAA0357 255 SG--QVEIWLNHVLGHMKATVRHEMTEGVTAYE 285 PF07728.4.ls: domain 1 of 2, from 728 to 872: score 57.6, E = 3.8e-14 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +v+ vG GtGKs++ + l + ++ +++rp+++ ++++ t ++L+g KIAA0357 728 SVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFG 774 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras +++ + t +w dg + +r + + ++ ++i+++++i+ KIAA0357 775 IIN-------PATGEWKDGLFSSIMR-ELANTTHDGPKWILLDGDID--- 813 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli p ++++L++++d+++ l+ +e+++ +p+ KIAA0357 814 PMWIESLNTVMDDNKVLTLASNERIPLNPTM------------------- 844 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+ ++ + + +A+++R + ++ p KIAA0357 845 --KLLFEISHLRT-------ATPATVSRAGILYINPA 872 PF07728.4.fs: domain 4 of 6, from 728 to 872: score 55.9, E = 4.6e-16 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +v+ vG GtGKs++ + l + ++ +++rp+++ ++++ t ++L+g KIAA0357 728 SVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFG 774 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras +++ + t +w dg + +r + + ++ ++i+++++i+ KIAA0357 775 IIN-------PATGEWKDGLFSSIMR-ELANTTHDGPKWILLDGDID--- 813 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli p ++++L++++d+++ l+ +e+++ +p+ KIAA0357 814 PMWIESLNTVMDDNKVLTLASNERIPLNPTM------------------- 844 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+ ++ + + +A+++R + ++ p KIAA0357 845 --KLLFEISHLRT-------ATPATVSRAGILYINPA 872 PF03028.6.fs: domain 1 of 2, from 2364 to 2542: score 351.6, E = 3.1e-106 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk ++++ ++p+ +ls+q+W++++ Ls +eeF++Ld+d+e++a k Wk KIAA0357 2364 VQTGTASPV-EFLSHQAWGAVKVLSSMEEFSNLDRDIEGSA--KSWK 2407 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+eklP+eWk +k+a+q+L++lRa+RPDR+ty KIAA0357 2408 KFVESECP-EKEKLPQEWK----------NKTALQRLCMLRAMRPDRMTY 2446 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk alr+FveekL G+k+v + ++ld++ ++e eS p tP++FiLSPG+DP+k KIAA0357 2447 ALRDFVEEKL-GSKYVVG-RALDFATSFE-ESGPATPMFFILSPGVDPLK 2493 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve ++k+G+tf+n++ +h++SLGQGQ++ +Ae+a++ Aak+GhWV+LQ KIAA0357 2494 DVESQGRKLGYTFNNQN-FHNVSLGQGQEV-VAEAALDLAAKKGHWVILQ 2541 N<-* N KIAA0357 2542 N 2542 PF03028.6.ls: domain 1 of 1, from 2364 to 2991: score 1256.8, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk ++++ ++p+ +ls+q+W++++ Ls +eeF++Ld+d+e++a k Wk KIAA0357 2364 VQTGTASPV-EFLSHQAWGAVKVLSSMEEFSNLDRDIEGSA--KSWK 2407 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+eklP+eWk +k+a+q+L++lRa+RPDR+ty KIAA0357 2408 KFVESECP-EKEKLPQEWK----------NKTALQRLCMLRAMRPDRMTY 2446 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk alr+FveekL G+k+v + ++ld++ ++e eS p tP++FiLSPG+DP+k KIAA0357 2447 ALRDFVEEKL-GSKYVVG-RALDFATSFE-ESGPATPMFFILSPGVDPLK 2493 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve ++k+G+tf+n++ +h++SLGQGQ++ +Ae+a++ Aak+GhWV+LQ KIAA0357 2494 DVESQGRKLGYTFNNQN-FHNVSLGQGQEV-VAEAALDLAAKKGHWVILQ 2541 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N + KIAA0357 2542 N--------------------------------------T---------- 2543 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL lemc++++efk++lF+L KIAA0357 2544 ---------------------------------LEMCSRETEFKSILFAL 2560 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi C+FHAVV+ERRkFGP+GWN+sY+FN++DL+iSv+vl+n+Lean KIAA0357 2561 CYFHAVVAERRKFGPQGWNRSYPFNTGDLTISVNVLYNFLEAN------- 2603 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad kvP+++LRYlfGeimYGG+ItDdwDrRL+rtyL ef++pe+++g + KIAA0357 2604 --AKVPYDDLRYLFGEIMYGGHITDDWDRRLCRTYLGEFIRPEMLEG--E 2649 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg ++Lap gf++P+n+dy +Y++yI+++LP+es P+l+GLhpNAEIg KIAA0357 2650 LSLAP------GFPLPGNMDYNGYHQYIDAELPPES-PYLYGLHPNAEIG 2692 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd fltq++ekl+rt+lelQpr++++ g+g ++r EE+vk++l++ KIAA0357 2693 FLTQTSEKLFRTVLELQPRDSQA--RDGAG--ATR-----EEKVKALLEE 2733 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir ile+++ ++F+++elm+k+ e+++P++vV++QE+ rmN+L++ei KIAA0357 2734 ILERVT-----DEFNIPELMAKV--EERTPYIVVAFQECGRMNILTREIQ 2776 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg rSL+eL lglkGeltm++++E+l ++L++++VP+ +Wa+++yPs+ +L+ KIAA0357 2777 RSLRELELGLKGELTMTSHMENLQNALYFDMVPE--SWARRAYPSTAGLA 2824 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv +W+ DLl Ri++L+ Wt d ++ P++vWL+GFFnPQsFLTAimQs+ KIAA0357 2825 AWFPDLLNRIKELEAWTGD-----FTMPSTVWLTGFFNPQSFLTAIMQST 2869 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARkn+wPLD+++L++++tkk++ee+ s pP++G+y+hGLf+EGA+WD++ KIAA0357 2870 ARKNEWPLDQMALQCDMTKKNREEFRS--PPREGAYIHGLFMEGACWDTQ 2917 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL +g+++e+k+K L++pmPV+++ka+pa dkq++++vy+cPVYkt++Rg+ KIAA0357 2918 AGIITEAKLKDLTPPMPVMFIKAIPA-DKQDCRSVYSCPVYKTSQRGP-- 2964 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +yv+tfnLktke ++skW+laGVALllq KIAA0357 2965 -------TYVWTFNLKTKE--NPSKWVLAGVALLLQ 2991 PF03028.6.fs: domain 2 of 2, from 2543 to 2991: score 987.3, E = 1.4e-297 *->flemckkpaefkrllFlLCfFHAVVqERRkFGPlGWNksYEFNesDL +lemc++++efk++lF+LC+FHAVV+ERRkFGP+GWN+sY+FN++DL KIAA0357 2543 TLEMCSRETEFKSILFALCYFHAVVAERRKFGPQGWNRSYPFNTGDL 2589 riSvdvldnyLeanakGRqNidpdkvPWeaLRYlfGeimYGGrItDdwDr +iSv+vl+n+Lean kvP+++LRYlfGeimYGG+ItDdwDr KIAA0357 2590 TISVNVLYNFLEAN---------AKVPYDDLRYLFGEIMYGGHITDDWDR 2630 RLLrtyLeefftpelfdgnadyeLapkidgdlgfavPpntdyeeYieyIe RL+rtyL ef++pe+++g +++Lap gf++P+n+dy +Y++yI+ KIAA0357 2631 RLCRTYLGEFIRPEMLEG--ELSLAP------GFPLPGNMDYNGYHQYID 2672 esLPsessPelfGLhpNAEIgfltqeteklirtllelQpreaggeldggs ++LP+es P+l+GLhpNAEIgfltq++ekl+rt+lelQpr++++ g+ KIAA0357 2673 AELPPES-PYLYGLHPNAEIGFLTQTSEKLFRTVLELQPRDSQA--RDGA 2719 gekvsrkkdssEEvvkqvlrdileklpkklCqklFdkeelmlkrteeikd g ++r EE+vk++l++ile+++ ++F+++elm+k+ e+++ KIAA0357 2720 G--ATR-----EEKVKALLEEILERVT-----DEFNIPELMAKV--EERT 2755 PlfvVlvQEiermNkLlkeirrSLkeLdlglkGeltmsndlEeliksLln P++vV++QE+ rmN+L++ei rSL+eL lglkGeltm++++E+l ++L++ KIAA0357 2756 PYIVVAFQECGRMNILTREIQRSLRELELGLKGELTMTSHMENLQNALYF 2805 grVPaWDmWakksyPslkpLgsWvtDLlkRirQLqeWtedsGGAklglPk ++VP+ +Wa+++yPs+ +L++W+ DLl Ri++L+ Wt d ++ P+ KIAA0357 2806 DMVPE--SWARRAYPSTAGLAAWFPDLLNRIKELEAWTGD-----FTMPS 2848 vvWLsGFFnPQsFLTAimQsvARknkwPLDkLcLdteVtkkekeeqdske +vWL+GFFnPQsFLTAimQs+ARkn+wPLD+++L++++tkk++ee+ s KIAA0357 2849 TVWLTGFFNPQSFLTAIMQSTARKNEWPLDQMALQCDMTKKNREEFRS-- 2896 pPedGvyVhGLfLEGArWDsktgllaeskpKeLfspmPViwlkavpasdk pP++G+y+hGLf+EGA+WD+++g+++e+k+K L++pmPV+++ka+pa dk KIAA0357 2897 PPREGAYIHGLFMEGACWDTQAGIITEAKLKDLTPPMPVMFIKAIPA-DK 2945 qetkdvyecPVYktkaRggvLSTTGHStnyvftfnLktkedtpaskWila q++++vy+cPVYkt++Rg+ +yv+tfnLktke ++skW+la KIAA0357 2946 QDCRSVYSCPVYKTSQRGP---------TYVWTFNLKTKE--NPSKWVLA 2984 GVALllq<-* GVALllq KIAA0357 2985 GVALLLQ 2991 //