hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00374353/chunk_1/iprscan-20080502-00374353.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0354 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00225 110.5 2e-28 1 SM00355 30.4 0.00024 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 77 176 .. 1 114 [] 110.5 2e-28 SM00355 1/2 666 688 .. 1 23 [] 21.3 0.14 SM00355 2/2 694 714 .. 1 23 [] 9.2 29 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 77 to 176: score 110.5, E = 2e-28 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cD+++vvg+ ++f+a H++vLaac S++F+alf+ KIAA0354 77 CDCVIVVGN---------RHFKA--HRSVLAAC---STHFRALFSVa 109 ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel +++++ + i+ld e +v++eaF al++ +Yt++l l e+ nv+++ KIAA0354 110 egdqtmnmIQLDSE----VVTAEAFAALIDMMYTsTLMLGES---NVMDV 152 LelAdfldSYGqip.lvelCeefllknl<-* L +A+ l ++ ++v++C+ +l +++ KIAA0354 153 LLAASHL----HLNsVVKACKHYLTTRT 176 SM00355: domain 1 of 2, from 666 to 688: score 21.3, E = 0.14 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+i C k+f + ++ k+H+rvH KIAA0354 666 YACKI-CCKTFLTLtDCKKHIRVH 688 SM00355: domain 2 of 2, from 694 to 714: score 9.2, E = 29 *->ykCpigCgksfssk.aLkrHmrvH<-* y C + Cgk+fs+ ++L +H + KIAA0354 694 YACLK-CGKRFSQSsHLYKHSK-- 714 //