hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00244165/chunk_1/iprscan-20080502-00244165.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0346
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 173.8    1.6e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1    1339  1502 ..     1   214 []   173.8  1.6e-47

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 1339 to 1502: score 173.8, E = 1.6e-47
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++ ql++l klP f+++ ++     +n+ls+++     ++ilg+++
    KIAA0346  1339    RWKPQLQELLKLPAFMRVTST-----GNMLSHVG-----HTILGMNT 1375 

                   gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli
                         ++lym+++   gs+Tp H +++ ++SvN+++++++   + W+++
    KIAA0346  1376 ------VQLYMKVP---GSRTPGHQENNNFCSVNINIGPGD---CEWFAV 1413 

                   Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr
                    ++++e +  ++ +h                + +++  s+w+  ++l+  
    KIAA0346  1414 HEHYWETISAFCDRH----------------GVDYLTGSWWPILDDLYAS 1447 

                   lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF
                   +           +pvyrfvQ+pG+ v+i +G+ H+V+ +G +++++a+N+
    KIAA0346  1448 N-----------IPVYRFVQRPGDLVWINAGTVHWVQATG-WCNNIAWNV 1485 

                   aspewlpmglrlveelr<-*
                    +++ ++++l+l+  ++   
    KIAA0346  1486 GPLTAYQYQLALERYEW    1502 

//