hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00244165/chunk_1/iprscan-20080502-00244165.nocrc
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Query sequence: KIAA0346
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                    169.9    9.2e-50   1
PF02373.13.ls JmjC domain                                    171.8    1.6e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02373.13.fs   1/1    1377  1485 ..     1   126 []   169.9  9.2e-50
PF02373.13.ls   1/1    1377  1485 ..     1   126 []   171.8  1.6e-48

Alignments of top-scoring domains:
PF02373.13.fs: domain 1 of 1, from 1377 to 1485: score 169.9, E = 9.2e-50
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+++p+S+tp+H+E+++++S+n+++++++++W++++++y+e++  
    KIAA0346  1377    QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETIS- 1422 

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                      +++ h       g       +++l+ +++P++++L+  +ipvyrfvQ
    KIAA0346  1423 --AFCDRH-------G-------VDYLTGSWWPILDDLYASNIPVYRFVQ 1456 

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   +pG++V++++g++H+v+ +G+++++a+N+   
    KIAA0346  1457 RPGDLVWINAGTVHWVQATGWCNNIAWNV    1485 

PF02373.13.ls: domain 1 of 1, from 1377 to 1485: score 171.8, E = 1.6e-48
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      +lY+++p+S+tp+H+E+++++S+n+++++++++W++++++y+e++  
    KIAA0346  1377    QLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETIS- 1422 

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                      +++ h       g       +++l+ +++P++++L+  +ipvyrfvQ
    KIAA0346  1423 --AFCDRH-------G-------VDYLTGSWWPILDDLYASNIPVYRFVQ 1456 

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   +pG++V++++g++H+v+ +G+++++a+N+   
    KIAA0346  1457 RPGDLVWINAGTVHWVQATGWCNNIAWNV    1485 

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